Gene
| Gene Model ID | pfu_aug2.0_21.1_03438 |
|---|---|
| Locus | scaffold21.1 : 536347 ... 537357 : + |
| To GenomeBrowser | scaffold21.1:536347..537357 |
| Genes list of scaffold | scaffold21.1 |
| Synonym | pfu_aug1.0_16646.1_03736 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 116 kda u5 small nuclear ribonucleoprotein partial | GO:0000398 GO:0003924 GO:0005515 GO:0005525 GO:0005737 GO:0015030 GO:0016020 GO:0016607 GO:0019013 GO:0044822 GO:0071013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_21.1_03438.t1 | 1 | 1 | EFG_IV | 21 | 63 | 1.5e-06 | 27.7 | 1.3e-10 | 1.9e-06 | 27.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_21.1_03438.t1 | gi|736172731|ref|XP_010766324.1| | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component, partial [Notothenia coriiceps] | 3.0e-38 |
| pfu_aug2.0_21.1_03438.t1 | gi|704253212|ref|XP_010148598.1| | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component, partial [Eurypyga helias] | 3.0e-38 |
| pfu_aug2.0_21.1_03438.t1 | gi|524889087|ref|XP_005101105.1| | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like isoform X1 [Aplysia californica] | 5.0e-38 |
| pfu_aug2.0_21.1_03438.t1 | gi|704476775|ref|XP_010072447.1| | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component, partial [Pterocles gutturalis] | 5.0e-38 |
| pfu_aug2.0_21.1_03438.t1 | gi|704177144|ref|XP_010133994.1| | PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like, partial [Buceros rhinoceros silvestris] | 7.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_21.1_03438.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03438.t1 atgattgctgagcctttggagaaaggattagcagaggatatagagaatgaggtagtacagataacatggcccaggaaaag attaggagagttcttccagaccaagtacgactgggatttgttggcagctagatctatatgggcatttggacctgactcaa caggaccaaatattctggtggacgacactctgccctcagaggtctgtagataa |
|
Protein
| Protein ID | pfu_aug2.0_21.1_03438.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03438.t1 MIAEPLEKGLAEDIENEVVQITWPRKRLGEFFQTKYDWDLLAARSIWAFGPDSTGPNILVDDTLPSEVCR |
|