Gene
| Gene Model ID | pfu_aug2.0_21.1_03441 |
|---|---|
| Locus | scaffold21.1 : 580169 ... 622516 : - |
| To GenomeBrowser | scaffold21.1:580169..622516 |
| Genes list of scaffold | scaffold21.1 |
| Synonym | pfu_aug1.0_14642.1_03531 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase rbbp6 | GO:0004842 GO:0005515 GO:0005654 GO:0009790 GO:0042787 GO:0043232 GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_21.1_03441.t1 | 2 | 1 | DWNN | 4 | 76 | 1.7e-26 | 91.9 | 1.1e-29 | 1.7e-26 | 91.9 |
| pfu_aug2.0_21.1_03441.t1 | 2 | 1 | zf-C3HC4_2 | 160 | 165 | 1.5e-07 | 31.3 | 10.0 | 15000.0 | -4.1 |
| pfu_aug2.0_21.1_03441.t1 | 1 | 1 | U-box | 255 | 327 | 6.0e-07 | 29.3 | 1.7e-09 | 2.5e-06 | 27.3 |
| pfu_aug2.0_21.1_03441.t1 | 2 | 2 | zf-C3HC4_2 | 261 | 301 | 1.5e-07 | 31.3 | 1.0e-10 | 1.5e-07 | 31.3 |
| pfu_aug2.0_21.1_03441.t1 | 2 | 2 | DWNN | 1536 | 1557 | 1.7e-26 | 91.9 | 4.4 | 6500.0 | -2.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_21.1_03441.t1 | gi|640823306|ref|XP_008068674.1| | PREDICTED: E3 ubiquitin-protein ligase RBBP6 [Tarsius syrichta] | 0.0 |
| pfu_aug2.0_21.1_03441.t1 | gi|524918340|ref|XP_005063458.1| | PREDICTED: E3 ubiquitin-protein ligase RBBP6 [Mesocricetus auratus] | 0.0 |
| pfu_aug2.0_21.1_03441.t1 | gi|699696437|ref|XP_009906234.1| | PREDICTED: E3 ubiquitin-protein ligase RBBP6 [Picoides pubescens] | 0.0 |
| pfu_aug2.0_21.1_03441.t1 | gi|675425451|ref|XP_008926482.1| | PREDICTED: E3 ubiquitin-protein ligase RBBP6 [Manacus vitellinus] | 0.0 |
| pfu_aug2.0_21.1_03441.t1 | gi|562838302|ref|XP_006148355.1| | PREDICTED: E3 ubiquitin-protein ligase RBBP6 isoform X2 [Tupaia chinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_21.1_03441.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03441.t1 atggcgtgcatccacttcaagttcaagaacagcttggactatgattccattacatttgatggtttacacatctccctggc agatctcaagagatcaatcatgcaaaggaaaaagttacgggaaactgatgtggatctgcaaatcataaatgccattacca agaaagcatactccgatgaggatgagatgattccaaagaactcctctgtgatagtggccagaatccctgtagcagaaggc actgtccctagaggtcctaagactatgaaggcatatgtagaagacccaaaaccacaggttcaggtggttacagagccggt tgtttccaaacccgctgctcttattgagtcagctaacctgatgagagctgatgccactgaggaagagaagattgaggcgg ccataaagcagtccacagaagcatttgatcctaagaactacgtgaagagaggcccaatgggaaaaccatcgtcaacgtac gtgtgcttcaagtgcaatggtactggtcactttatagagaactgtcctgtgaagccaggggaaccagtagttgccaaaga caaaatggaacgttatcccacaggaattcccatggattttctgactgtagtagcagataggcatactcagggagcgttta gactgagctcaggacaatatgctgtacctaccatagacaaagaagcataccggatcgggaagaaggagcggccaccattt ctaccagagcctgtcaaggagaaaaagcaagataaagccaaagtaccacaggagctagtttgtccaatctgcaaggacct attgaccgatgctgtggtcattccttgctgtggtaacagctactgtgatgaatgtatccgtgaccatctactggactctg aagatcacaaatgcccccattgtggagagactgatgtttccccagataaactcatagcaaacaagatgttgagatcagct gtgaccaattttctgaatgagacagggtacaccaaagtgacaaaagcgatgatgcagcgacaggagtccccacccctccc cctcctcccccacccaaaactcaacaattgtgtaccagctggaatgagtcccccaacgccagtcaaagatgaaaaggatc taccactaaagccagcatcgatacctagtaatgcaccaacacctgcatcagttcccagtaatgtaccaagtggtatgcca ttgcctaaccgtcctcaaggccccccagtagggcctcccattattcctggaccccaaggaccagcacgaccacccttccc tggaccacacgtagataataccagtatatattattcctatcttgcagtgtcccgaccccctcctgttgctgtacagtcaa ggatgatgagacctgccggtccccctccagggccccctcctgcccatatactgccaggccctggttttccttctgcacct atacagtcattagtgccagcagcatttggaccaagaggacctttgccaaatcaggcattacctccagcttgccctggttt tggccctccggggccttatccagggcgatttccaggaccttctggtatgcccattggtccaaatggaaggccactcacag aagaagaattctatagagagaaaacaaagttaattcatcgagaacagaagaagaagaagccagatatgatggatgacttt gaaagagagctgaaagaacgagaactgaagaaaagacctagatccaggacaaggtcaagaacaaggactagaagtagatc atggacacctccaccaaggaaaagatctagatcaatatcaaaatcaaggtccccacctcgtaagaaaaggtcatacacaa ggtcaagaacaaggagcaaatctcctttaaggtcaagaacaaggtcaccaagaagacgaagccgtacacctatgtcaagg tcaccaagaccaaggtcaagaacacctagaccaaggtcacgatcacccagacctttgtctcgttcacctagaccaagatt tacccgatccaggagttggtccagatctaggacaccaagaagaagcttctctagaagtccaccacctaggtacagatctc gttctccgccaccaccaccaccaaggtatcgctcccgatcacgtagtccccgcagggatcgatggactccagaattcaag aggcgatcaatgtcaccaccatacagatcttatgataagtcaaggtcaccacctcctttcaggtcatatgacagatcaca tgacaggtcaccacctgcattcaggaaatatggctatggacgtggaaaacctttttctccagagaggtacccatcagcta actatggatatccaccagaggacccttatggagggtatgatgcacatgtatacagtgaattctacagagagttcttttca cggtatggtgtccctcctcctcccccgcccaatccactaggatatgactctaatccttattatgatcccaagtatggtcc tccatacaggggcaggtcccctagaggtaacaaacgaggatcatcatgggagaaagactctgacagtaaccgtagatctc gtgaaaagagaagatcaaaggaaagggaggcatcacgagattctaagcaggtgaaaaaatccagaaagaaggaggatgag aaaagcaaaaaggatgaaagtaagtctaaaaaagacaaagaaaaggaaaacaaggagaagtcaaagaaggtgaaagataa gaaggagagtagtaagaaagaagagagcaaaagtcgtacaacaaagaagaaggaatctgaggtgaaagaacaatccaaaa cggagaaatcaaaagcaaaggtaaagaaatctaaggaatcctcgaaaatagataagccagaaaaagaggaaataactgaa aaggcaaaagaagaaaatgtaaaggaaaacaagaaaaaagaggaaaagaagtctacaaaacataaagaggaagacaataa aaggaaatctgaagataaagagaatattcatacaaaggaaacagaggaggaggatgaagaagacgaagatgatgatgaag tagaagaggaggagacagaatctgaaagtgatgaagaagtagaggaggaagttgatgaagatgaggatgataatagcact agtaatgtcactaggaaggaggaagcagagaagaaagactccaacaaaatattcaaatctcacattagggaacttgttgc tgagaaggatacaaagattgtgaaaacaaatgatatgaaacaagaggatgaaaaaccaaagacaaaggaaattgttagtg agaaggttgaagaggccgtagtggataaaaaagtggagaaaagggagaaaaagaaagatgaaaaggagaaagttgaagtc ctgaaggaacagaaacaggagttggcttcagaggagaaaaaatctaaggagaaaaaaacacattcaaaatcaaaggaaga agctgtgaagaaaaaaggaaggaagaagaagtctgcccaaagtgatgaaaaggaagctgccagtccaactaaacgtttac gtacatcgagtcaagcatcgagtcaagatagttctactgattctactgaacccacacttgacaaaaataaggacgaattg atgctctctcctcctcagttgtctaaatgggaacgtgatgatttagaagaaaattctccagaacccagactaaagaaaaa aggacctgagaaaaaactaccaaaatccgtaattgagagtgcagataaagcactaacacaaaagccagcacgtccaatct ccgtggccagcagcatcataactacgtcaagcctggctaaccgtctgcagaagtctcctcaaaggaaagcagagtcctcg gaaaaggaggcagcagccaaaccccgcaaggtgttttataatgaggaggaatcctcaaagaaagaggatgataggagaaa ggtgatgagtcgtgatagctcaatgcagataactgtggctggagataaaggtgcaaagaaacaggaacctaaacgggaag tgaaagatctaaggttgtctctgatggaaaaacgagggaaaaaagagcttgagagacagttatcaaatgccagtataact gaaaggagattgtcagactcgagggacagtatcaaaagtagatgtgattcagacgataactataatcctgagaaagtatt cctgcaaagtttgaaaaccagacatgaaaaagaagaaaagaaaagaatagagaaggagaaagagaaatcaaggggaaaat ctgtaaaggagaaaaaggatagaagagatgatgaaaggctaagagataagagtacttcagggaaaaggaatgaagaaaaa gatgagaattctgaaaaaagtgagaaaccaaaagaacgatccaaggtgaaagtcaaacaagagaaagaaaaagagactca aaaggaatcaaaaacagagaaagccaaatctaaaaaagacaagaaagtgaagaaagagaaggaagaggaactgagtgaga aagaaaaagatatagaaaagaaaataaagaaagaaagagatgaaacacaggtgaagaaggaaaaagatcgttcaaagaaa gagaaagtggatgtaaagaaagagaagggagaggaaaatgtaaagaaagatgaaattgttaagagagatgaggaagaggt gattgaagaaagagaaattgttattgtgaagaaagagagcgtagaaagaaaggagtcaatagtggatgaagctacatttg agcctgactataacgaagttggtcttagtgatactgaggcagagaaagccaaagccacgtcctctcaaagtgaaagtgaa agtgagagctctgaggaggaaaaggtgaaaaagcacaagaagaagaagagcaagcacaagcacaaaagtaaacataaaaa acataagaagcataagaagaaacataaaaagcacagagatgaagctcatcaatattctcagaaactgaaagaaattctac catga |
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Protein
| Protein ID | pfu_aug2.0_21.1_03441.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03441.t1 MACIHFKFKNSLDYDSITFDGLHISLADLKRSIMQRKKLRETDVDLQIINAITKKAYSDEDEMIPKNSSVIVARIPVAEG TVPRGPKTMKAYVEDPKPQVQVVTEPVVSKPAALIESANLMRADATEEEKIEAAIKQSTEAFDPKNYVKRGPMGKPSSTY VCFKCNGTGHFIENCPVKPGEPVVAKDKMERYPTGIPMDFLTVVADRHTQGAFRLSSGQYAVPTIDKEAYRIGKKERPPF LPEPVKEKKQDKAKVPQELVCPICKDLLTDAVVIPCCGNSYCDECIRDHLLDSEDHKCPHCGETDVSPDKLIANKMLRSA VTNFLNETGYTKVTKAMMQRQESPPLPLLPHPKLNNCVPAGMSPPTPVKDEKDLPLKPASIPSNAPTPASVPSNVPSGMP LPNRPQGPPVGPPIIPGPQGPARPPFPGPHVDNTSIYYSYLAVSRPPPVAVQSRMMRPAGPPPGPPPAHILPGPGFPSAP IQSLVPAAFGPRGPLPNQALPPACPGFGPPGPYPGRFPGPSGMPIGPNGRPLTEEEFYREKTKLIHREQKKKKPDMMDDF ERELKERELKKRPRSRTRSRTRTRSRSWTPPPRKRSRSISKSRSPPRKKRSYTRSRTRSKSPLRSRTRSPRRRSRTPMSR SPRPRSRTPRPRSRSPRPLSRSPRPRFTRSRSWSRSRTPRRSFSRSPPPRYRSRSPPPPPPRYRSRSRSPRRDRWTPEFK RRSMSPPYRSYDKSRSPPPFRSYDRSHDRSPPAFRKYGYGRGKPFSPERYPSANYGYPPEDPYGGYDAHVYSEFYREFFS RYGVPPPPPPNPLGYDSNPYYDPKYGPPYRGRSPRGNKRGSSWEKDSDSNRRSREKRRSKEREASRDSKQVKKSRKKEDE KSKKDESKSKKDKEKENKEKSKKVKDKKESSKKEESKSRTTKKKESEVKEQSKTEKSKAKVKKSKESSKIDKPEKEEITE KAKEENVKENKKKEEKKSTKHKEEDNKRKSEDKENIHTKETEEEDEEDEDDDEVEEEETESESDEEVEEEVDEDEDDNST SNVTRKEEAEKKDSNKIFKSHIRELVAEKDTKIVKTNDMKQEDEKPKTKEIVSEKVEEAVVDKKVEKREKKKDEKEKVEV LKEQKQELASEEKKSKEKKTHSKSKEEAVKKKGRKKKSAQSDEKEAASPTKRLRTSSQASSQDSSTDSTEPTLDKNKDEL MLSPPQLSKWERDDLEENSPEPRLKKKGPEKKLPKSVIESADKALTQKPARPISVASSIITTSSLANRLQKSPQRKAESS EKEAAAKPRKVFYNEEESSKKEDDRRKVMSRDSSMQITVAGDKGAKKQEPKREVKDLRLSLMEKRGKKELERQLSNASIT ERRLSDSRDSIKSRCDSDDNYNPEKVFLQSLKTRHEKEEKKRIEKEKEKSRGKSVKEKKDRRDDERLRDKSTSGKRNEEK DENSEKSEKPKERSKVKVKQEKEKETQKESKTEKAKSKKDKKVKKEKEEELSEKEKDIEKKIKKERDETQVKKEKDRSKK EKVDVKKEKGEENVKKDEIVKRDEEEVIEEREIVIVKKESVERKESIVDEATFEPDYNEVGLSDTEAEKAKATSSQSESE SESSEEEKVKKHKKKKSKHKHKSKHKKHKKHKKKHKKHRDEAHQYSQKLKEILP |
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