Gene
| Gene Model ID | pfu_aug2.0_21.1_03442 |
|---|---|
| Locus | scaffold21.1 : 631897 ... 640761 : + |
| To GenomeBrowser | scaffold21.1:631897..640761 |
| Genes list of scaffold | scaffold21.1 |
| Synonym | pfu_aug1.0_1459.1_22599 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable helicase with zinc finger domain-like | GO:0016787 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_21.1_03442.t1 | 1 | 1 | zf-CCCH | 227 | 250 | 1.2e-06 | 27.9 | 1.5e-09 | 2.7e-06 | 26.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_21.1_03442.t1 | gi|676480553|ref|XP_009062097.1| | hypothetical protein LOTGIDRAFT_106967, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_21.1_03442.t1 | gi|524870377|ref|XP_005091973.1| | PREDICTED: probable helicase with zinc finger domain-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_21.1_03442.t1 | gi|260801030|ref|XP_002595399.1| | hypothetical protein BRAFLDRAFT_69229 [Branchiostoma floridae] | 7.00649e-43 |
| pfu_aug2.0_21.1_03442.t1 | gi|390345973|ref|XP_790596.2| | 4.99983e-42 | |
| pfu_aug2.0_21.1_03442.t1 | gi|585709865|ref|XP_006824430.1| | PREDICTED: probable helicase with zinc finger domain-like, partial [Saccoglossus kowalevskii] | 3.00004e-41 |
Transcript
| Transcript ID | pfu_aug2.0_21.1_03442.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03442.t1 atggatagggtaggagagaacagattagggatagcagtgaccagccatgaccaggcacctgaaaactccaccctgatatt cctgctggacaggatatccacattactaaaacaggtgcgttttccttttcacaattatagtgctctacagacatatgggg accatgagaaactacaagaaaagaagatcaaaatactttgtcaccaaggaagatttgatgagggttttgaatatgccaag aaatgggcactgagtgaaccaaagagcaaaacagcacagaaagagcttaaaagattaaaaatagtaattcaggcattgaa agatcaagattcagatgacaatgaatcaaagggaaatgactctgatgatctcagcgttgatgttacgtctaacgatgata cgtctaccgacaaacttagatcagaggacagcagcacaaaacatagccaaggctcacatcatccatcatctatcacagta tcctcagacacagcttcaccctcatctaacacagaagaccaggatcattgttgtacattttgtgacattaagttttcatc tgtggcggagttagagacacattgtcgtagtgacctacataaaaagaggatcacctcagacgatgatcagaattggcaat atcgtgtacctccaagaaatctaacgagtgaagagttcacactctgtagaagtttttctgataatggaaagtgtaatttt ggtgacaagtgtactcaggcacactctaaagaagaacttaatgaatggaaagaaaggttcaaattcaggaaacagcaaat caaaattgctagagacaaacatctccatggtaacacatacgcagaacaactcatggaaaaacttattaatgctgaaaatt caaaatctgtgatgacacagaatgtagagtatgctaagatacatgtaaattcagagttgaaagttaacatgacgaccaag aaatgtacgaatgcttggaccttcacaatcactagcaagaagtga |
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Protein
| Protein ID | pfu_aug2.0_21.1_03442.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03442.t1 MDRVGENRLGIAVTSHDQAPENSTLIFLLDRISTLLKQVRFPFHNYSALQTYGDHEKLQEKKIKILCHQGRFDEGFEYAK KWALSEPKSKTAQKELKRLKIVIQALKDQDSDDNESKGNDSDDLSVDVTSNDDTSTDKLRSEDSSTKHSQGSHHPSSITV SSDTASPSSNTEDQDHCCTFCDIKFSSVAELETHCRSDLHKKRITSDDDQNWQYRVPPRNLTSEEFTLCRSFSDNGKCNF GDKCTQAHSKEELNEWKERFKFRKQQIKIARDKHLHGNTYAEQLMEKLINAENSKSVMTQNVEYAKIHVNSELKVNMTTK KCTNAWTFTITSKK |
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