Gene
| Gene Model ID | pfu_aug2.0_21.1_03443 |
|---|---|
| Locus | scaffold21.1 : 640817 ... 656595 : + |
| To GenomeBrowser | scaffold21.1:640817..656595 |
| Genes list of scaffold | scaffold21.1 |
| Synonym | pfu_aug1.0_1459.1_22599 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable helicase with zinc finger domain-like | GO:0000166 GO:0008152 GO:0016787 GO:0043167 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_21.1_03443.t1 | 2 | 1 | AAA_30 | 91 | 154 | 9.3e-09 | 35.1 | 1.9e-08 | 1.5e-05 | 24.6 |
| pfu_aug2.0_21.1_03443.t1 | 2 | 1 | AAA_11 | 92 | 199 | 3.1e-29 | 102.2 | 1.6e-13 | 1.3e-10 | 41.2 |
| pfu_aug2.0_21.1_03443.t1 | 2 | 1 | PhoH | 92 | 150 | 4.7e-07 | 29.2 | 1.2e-06 | 0.00096 | 18.4 |
| pfu_aug2.0_21.1_03443.t1 | 1 | 1 | AAA_19 | 113 | 159 | 4.3e-07 | 29.5 | 1.4e-09 | 1.1e-06 | 28.2 |
| pfu_aug2.0_21.1_03443.t1 | 2 | 2 | AAA_11 | 214 | 284 | 3.1e-29 | 102.2 | 8.5e-19 | 7.0e-16 | 58.5 |
| pfu_aug2.0_21.1_03443.t1 | 2 | 2 | PhoH | 241 | 281 | 4.7e-07 | 29.2 | 0.0014 | 1.2 | 8.3 |
| pfu_aug2.0_21.1_03443.t1 | 2 | 2 | AAA_30 | 243 | 280 | 9.3e-09 | 35.1 | 0.0024 | 2.0 | 7.9 |
| pfu_aug2.0_21.1_03443.t1 | 2 | 1 | AAA_12 | 295 | 411 | 0.0 | 167.6 | 3.5e-16 | 2.9e-13 | 49.6 |
| pfu_aug2.0_21.1_03443.t1 | 2 | 2 | AAA_12 | 428 | 623 | 0.0 | 167.6 | 1.9e-36 | 1.6e-33 | 115.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_21.1_03443.t1 | gi|573895589|ref|XP_006635541.1| | PREDICTED: probable helicase with zinc finger domain-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_21.1_03443.t1 | gi|551512868|ref|XP_005807948.1| | PREDICTED: probable helicase with zinc finger domain-like [Xiphophorus maculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_21.1_03443.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03443.t1 atgagaaaggtttatgaagtgcttgtcgaagacaaagggaggaactttatatttcttagattgtcaggaaagtgtgtgga ggaacttaacttatctagtgaccaggaattctatgctgaggtgcagttccagttgaacagacttcccaaatgtgaacagc atgcagctgtagacaaattaccgaccctggacttgatgttcccacccacccagccgacagaaccctggtggtctgatgaa aatgtccagttcagtgagatggtgagcacaagacttaataagaaacaaaaggaggctatccagggtataacagcaagaga ggacctgtccctcccacccatacttctgattggtccatatggtacaggcaaaacgtacacgttagcacaggctgccatgc aggccctagccaatgatgatgccaggatactcatatgtacacactcaaacagtgctgctgatatatacataaaagatttt ctccatccgatggtaaaggaaggtcactttgaagcacgtcccctgcgtatttattaccggcaccgatgggtacaaacggt gccagacgtggttctccagtactgcctgcgagagatgtccgtgtcagatttcaacttccgaatgccaaccttggaggatg tggagaaacatcgcatcattataacaactctcagtacagctagatacttgtgtgacctagatctgccgcagggatttttc agccatatatttgttgatgaggctgctcaggcgatggagagtgagacattgatccccttgtcactgtctggtaaaacaac caagatagtactctgtggagatcacatgcagttgaatccagaggtatactcagactttgctaagcagcagggattccaca agaatctgttagatcgtctgtacgagttttaccctgataactgtccctgtaagataatgctgtgtgagaactacagatcc catgctgccatcattgactttacctctgatctattctacgacagtcagctggtctccggtagtaatcagcccttacatcc catgtactaccctctgacgttcttctctacacgaggggaggacatacaacatcaaaacaacactggattctataatatag cagaggtacatgaagtagtagacagagtagatgacttacaaaagaactggccacctgaatggggagaaatagatggaaat attggtgtctttgctccatattctgaccagttgaatccagaggtgtactcagactttgctaagcagcagggattccacaa gaatctgttagatcgtctgtacgagttttaccctgataactgtccatgtaagataatgctgtgtgagaactacagatccc atgctgccatcattgactttacctctgatctattctatgacagtcagttggtctccggtagtaatcagccgttacatccc atgtactaccctctgacgttcttctctacacgaggggaggacatacaacatcaaaacaacactggattctataatatagc agaggtacatgaagtagtagacagagtagatgacttacaaaagaactggccacctgaatggggagaaatagatggaaata ttggtgtctttgctccatattctgaccaggttgttagaataagaggagagctaaggaagagaaaattatttcatgtcagt gtagaaagagttttcaatgtacaaggtaagcagttccgtgccatcattctgagtacggtgagaacaagacacacgtgtag tgcagactcctcacaggaagattttgtggactacggtttcctgtcaaacgttaagctgctgaacactgccttaaccagag ctcagagtctggttatagtcgttggggatcctctgtctctatgtctggtgggaaagtgcaggaaagtttgggaatacttt ctggagatatgtaatgagcacaaaagtttgtatggtatgaaacagagtgtgctgagagcacaactgaatagtgctgaatt aaggaaaacttatgtgctgaatcccctggctccagagtttgttcccaataggctgtaccatgtgacccacagtatgggtc tgccaggacaaggaatccagaaccctcaacaacaggctggttacttccttggacagagaatgatgtatccaggaaaccct tatcaacagatgtacccctcctacatgcctgncactatgtacccatcctacatgcctttaccataccatcagggctacta tccccccatgttgtatcgaccctatgttccacactttgtcggaggaaggggaggtagggtccccacaagggtggtgtacc ctcgtcagatgccccctactgtccccctagccacttctggaagggcaactcctgacaaggaaaggtcaagtccagaggtc accagggccacagaatctccccaatcacaagggaccaagaaggcacacgtctcacagaggaatcgtcagatggtgtatat accaagagtgcagactccattccagaccatgtactataacccctaccatcagccatacccaggttattacttcttaccag aggatcctagattagcccccacattacaccctcaaagatatccttactaccccgggacaggtatacacccagctcacatg ctcccacaacattatgctggtgctcctttcttacctcccactactgtgattcgtcctggccagccattacaagagggagc acccatcccaggagatgtagatgtcaaagatagggttcactctaactcctcttccccaagcccccagggacgggcttact ccccggcagtgtcacctgggtccacgatgggaggacaacacatccagcttctgcctaatgccagacatatacctgtccat ctgtataacaggtccggcacacccagtagtggctccagatctagtactcctatgggagggagggattcaccagaacaagt ggaagatatgagacgggtgttagaatcagaatatctgaaatctgtaagccctgcactggaaatgcaggaacggcgagcgt cagcacagagtcctctggcaagggtgatcactcaacgacaaggctatgtaagagaagaacatgtatcacaggcaggattg caggcgtccatgtctagtagtgtacagtacaacgcctccatgatagtgtctgaggagtccatgtcaccagtgcacaatgg agaaaggagtgatggagcatcatccactagaaggaaagacggcaggagaatgcccagcaagctggaaataccaacagggt tcagccgtcagttcagtgaggatattgaaacaccaactgaaattacaaacctggtaagaatgatagatgaaaccattgac gaacaagcagagctgggaatgagagaacaaatgaccctagagaaccagaactcctttgcctctcggcttagctctaaaag ctctagtggtaagctgtacctcaacatccccaaacgttcatcaatggatacgtcaggttcagcctcttcctcctccccat cttccagccctacagggagtgacgacaggaagcctacgtatgctggggtcttacgtcgtcgcttaccaacctcgtctgag gagatcgaccccagtatgttagaaccacagacccctcacacaccggctggattcgtatctccaggagatgatatcgatac agaccctctaggaattctgagaaatcttaacatcaatgcttcagcagagaatcagagaacctataaatatttttcttag |
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Protein
| Protein ID | pfu_aug2.0_21.1_03443.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03443.t1 MRKVYEVLVEDKGRNFIFLRLSGKCVEELNLSSDQEFYAEVQFQLNRLPKCEQHAAVDKLPTLDLMFPPTQPTEPWWSDE NVQFSEMVSTRLNKKQKEAIQGITAREDLSLPPILLIGPYGTGKTYTLAQAAMQALANDDARILICTHSNSAADIYIKDF LHPMVKEGHFEARPLRIYYRHRWVQTVPDVVLQYCLREMSVSDFNFRMPTLEDVEKHRIIITTLSTARYLCDLDLPQGFF SHIFVDEAAQAMESETLIPLSLSGKTTKIVLCGDHMQLNPEVYSDFAKQQGFHKNLLDRLYEFYPDNCPCKIMLCENYRS HAAIIDFTSDLFYDSQLVSGSNQPLHPMYYPLTFFSTRGEDIQHQNNTGFYNIAEVHEVVDRVDDLQKNWPPEWGEIDGN IGVFAPYSDQLNPEVYSDFAKQQGFHKNLLDRLYEFYPDNCPCKIMLCENYRSHAAIIDFTSDLFYDSQLVSGSNQPLHP MYYPLTFFSTRGEDIQHQNNTGFYNIAEVHEVVDRVDDLQKNWPPEWGEIDGNIGVFAPYSDQVVRIRGELRKRKLFHVS VERVFNVQGKQFRAIILSTVRTRHTCSADSSQEDFVDYGFLSNVKLLNTALTRAQSLVIVVGDPLSLCLVGKCRKVWEYF LEICNEHKSLYGMKQSVLRAQLNSAELRKTYVLNPLAPEFVPNRLYHVTHSMGLPGQGIQNPQQQAGYFLGQRMMYPGNP YQQMYPSYMPXTMYPSYMPLPYHQGYYPPMLYRPYVPHFVGGRGGRVPTRVVYPRQMPPTVPLATSGRATPDKERSSPEV TRATESPQSQGTKKAHVSQRNRQMVYIPRVQTPFQTMYYNPYHQPYPGYYFLPEDPRLAPTLHPQRYPYYPGTGIHPAHM LPQHYAGAPFLPPTTVIRPGQPLQEGAPIPGDVDVKDRVHSNSSSPSPQGRAYSPAVSPGSTMGGQHIQLLPNARHIPVH LYNRSGTPSSGSRSSTPMGGRDSPEQVEDMRRVLESEYLKSVSPALEMQERRASAQSPLARVITQRQGYVREEHVSQAGL QASMSSSVQYNASMIVSEESMSPVHNGERSDGASSTRRKDGRRMPSKLEIPTGFSRQFSEDIETPTEITNLVRMIDETID EQAELGMREQMTLENQNSFASRLSSKSSSGKLYLNIPKRSSMDTSGSASSSSPSSSPTGSDDRKPTYAGVLRRRLPTSSE EIDPSMLEPQTPHTPAGFVSPGDDIDTDPLGILRNLNINASAENQRTYKYFS |
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