Gene
| Gene Model ID | pfu_aug2.0_21.1_03445 |
|---|---|
| Locus | scaffold21.1 : 665628 ... 682662 : - |
| To GenomeBrowser | scaffold21.1:665628..682662 |
| Genes list of scaffold | scaffold21.1 |
| Synonym | pfu_aug1.0_1459.1_22601 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| neuronal acetylcholine receptor subunit alpha-7-like isoform x1 | GO:0006810 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_21.1_03445.t1 | 4 | 1 | Neur_chan_memb | 2 | 15 | 2.0e-24 | 86.8 | 1.7 | 8400.0 | -3.7 |
| pfu_aug2.0_21.1_03445.t1 | 2 | 1 | Neur_chan_LBD | 26 | 199 | 0.0 | 234.0 | 1.1e-36 | 5.5e-33 | 113.9 |
| pfu_aug2.0_21.1_03445.t1 | 4 | 2 | Neur_chan_memb | 231 | 312 | 2.0e-24 | 86.8 | 1.4e-16 | 7.1e-13 | 48.9 |
| pfu_aug2.0_21.1_03445.t1 | 2 | 2 | Neur_chan_LBD | 345 | 541 | 0.0 | 234.0 | 4.4e-38 | 2.2e-34 | 118.5 |
| pfu_aug2.0_21.1_03445.t1 | 4 | 3 | Neur_chan_memb | 550 | 647 | 2.0e-24 | 86.8 | 1.4e-17 | 6.9e-14 | 52.3 |
| pfu_aug2.0_21.1_03445.t1 | 4 | 4 | Neur_chan_memb | 643 | 665 | 2.0e-24 | 86.8 | 0.19 | 930.0 | -0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_21.1_03445.t1 | gi|260813912|ref|XP_002601660.1| | hypothetical protein BRAFLDRAFT_85747 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_21.1_03445.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03445.t1 atggttccgacattgttactttcaatactggttgtttttggttttcctattgtggccacttcatcatcatacgaacaagg catattagacagtttgaaagaaaaccataatgtactaatagggccgtactcctcacagaactctcgcctggatatatcag tgagatttattccacgcggagtagtcaactttgatgaagttgcagggcaaatctcaatcgcaatggcagtggatttccga tggaaagatccaggtctggcatggaatttgtctcaatatggaaatatttctactctcatcttaccagattcatcgatatg gaaaccaagcatagccctagccaatcctgtggataggtccctcttgtttccagaggacgattttgacgttcgtgtgtact ttaccggtgacgtcatctggataatggcgggtacagtgagcaccatgtgcaaaccttttgttaagtattatccattcgat gtccatacatgtagtataaagctatttcctatgagtcatactctaagagaaatacaattaactcctactttgaaaatgga tgttttcgataatttcggacagtggaatttgttcaacgagagagttcatacggaaatattggatgtgttttcacttgctt catttgatttcagcatcaaacgtcgacctgaattctctctactcagtctctgtataccgatacttttccttggcgtcctg aactcttgtgttttcttaattcctccagattcaggagaaagaatatcgtatgctataaccgtcttactgtcctttgcagt ttttatgacaatcatcagtgcgaatatgcccaaaaattcagatccggttccagttctatgctatgttctcatggtaatga tgacagaaagtggggtatttgttggatatactgttggaaacatacgttataccgtcggggaaatgccccgacggtttaac tgcgtttctaacagagagagagttgtctgccctcaactagctgaatcgatgtgttacattacaaacactatgaaaatata tgacaaaatattcaaagattataacaaactatttagaccaatattgaatgagagcgacgtgatgaacattacagtgatct tcataccaagggggattgttgaatttaacgaagtggagggtagtatttccgttgccatggcaatagatatcagatgggta gatgatttcttgaattgggatcctagacaatatgggaacgttagtacgataattttagcagacgataaaatttggaaacc tttcctggctctagcaaacccaaaaggggatggaattctatttgcagatagccaattcaaagtgcgtgtattcgacaatg gtacaattgtttggttgaccgcgggaacattgacagtgacgtgtaaacctgacgtcagaaattatccttttgacgtacat agctgtagtgtcaaaatattcccaatggacgaaatcatccgtgaaatacgtttatattccgatcttaaactccatgtatt tgacaacttcggacaatgggacatgattcacgagggcgtgtacgataccatgttggatatattttctctaacagtatttc acttcaaaatcagacggcgaccgcagttttctgtccttggaatctgcttacctattcttttcattggaatcatgaacgca atcgtattcattatacccccaacttccggtgagaggatatcgtttgctatcacggtacttttggcgcttattgtgtttat gtccattgttcattcatccatgccaaagaactcggaccctgtacctattttgtcctatgtattgatgactatgatgatag agagtggactagtggtatttcttaccgttatgagtctgcgattccatttgaaacaggagacatcggaaggagcgtttcct tttaaagtaaaggctgtactctttgacagattttgtttctggataacattgatatcgttcattttcaccatggttgcctt tatcttaggactttacattcacaagttatctcatgaataa |
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Protein
| Protein ID | pfu_aug2.0_21.1_03445.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_21.1_03445.t1 MVPTLLLSILVVFGFPIVATSSSYEQGILDSLKENHNVLIGPYSSQNSRLDISVRFIPRGVVNFDEVAGQISIAMAVDFR WKDPGLAWNLSQYGNISTLILPDSSIWKPSIALANPVDRSLLFPEDDFDVRVYFTGDVIWIMAGTVSTMCKPFVKYYPFD VHTCSIKLFPMSHTLREIQLTPTLKMDVFDNFGQWNLFNERVHTEILDVFSLASFDFSIKRRPEFSLLSLCIPILFLGVL NSCVFLIPPDSGERISYAITVLLSFAVFMTIISANMPKNSDPVPVLCYVLMVMMTESGVFVGYTVGNIRYTVGEMPRRFN CVSNRERVVCPQLAESMCYITNTMKIYDKIFKDYNKLFRPILNESDVMNITVIFIPRGIVEFNEVEGSISVAMAIDIRWV DDFLNWDPRQYGNVSTIILADDKIWKPFLALANPKGDGILFADSQFKVRVFDNGTIVWLTAGTLTVTCKPDVRNYPFDVH SCSVKIFPMDEIIREIRLYSDLKLHVFDNFGQWDMIHEGVYDTMLDIFSLTVFHFKIRRRPQFSVLGICLPILFIGIMNA IVFIIPPTSGERISFAITVLLALIVFMSIVHSSMPKNSDPVPILSYVLMTMMIESGLVVFLTVMSLRFHLKQETSEGAFP FKVKAVLFDRFCFWITLISFIFTMVAFILGLYIHKLSHE |
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