Gene
| Gene Model ID | pfu_aug2.0_210.1_00441 |
|---|---|
| Locus | scaffold210.1 : 345815 ... 361628 : - |
| To GenomeBrowser | scaffold210.1:345815..361628 |
| Genes list of scaffold | scaffold210.1 |
| Synonym | pfu_aug1.0_80631.1_42039 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| retrovirus-related pol polyprotein from transposon | GO:0005515 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_210.1_00441.t1 | 3 | 1 | rve | 149 | 177 | 2.0e-11 | 44.0 | 2.2 | 4600.0 | -2.4 |
| pfu_aug2.0_210.1_00441.t1 | 3 | 2 | rve | 330 | 385 | 2.0e-11 | 44.0 | 1.2 | 2500.0 | -1.5 |
| pfu_aug2.0_210.1_00441.t1 | 3 | 3 | rve | 520 | 587 | 2.0e-11 | 44.0 | 1.2e-14 | 2.5e-11 | 43.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_210.1_00441.t1 | gi|676434674|ref|XP_009047304.1| | hypothetical protein LOTGIDRAFT_230554 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_210.1_00441.t1 | gi|524869395|ref|XP_005091492.1| | PREDICTED: uncharacterized protein LOC101857002 isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_210.1_00441.t1 | gi|291236763|ref|XP_002738307.1| | PREDICTED: uncharacterized protein K02A2.6-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_210.1_00441.t1 | gi|585660095|ref|XP_006816318.1| | PREDICTED: uncharacterized protein K02A2.6-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_210.1_00441.t1 | gi|512819104|ref|XP_004911589.1| | 9.80909e-45 |
Transcript
| Transcript ID | pfu_aug2.0_210.1_00441.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_210.1_00441.t1 atggcaacgggagctctaaagaaaagagatttaatggccgaagccaaaaagttttgtgacagtttatcaaatgtgttcat gcacaaaaagcgggaccctcaaacgcagcatcttctggagcaagcgaaagctcttatcgaggccttagtatctgagaatc agaagtatgcagtggacccacggtctagctcaccaagagggactagtcgctcgggaggaggaatggggcagctttgggtc aaattagacgaactcaaacgcgaaaacgaggcgttacggaaaaagcgcgaaaaacttgctcctggtgagaaaccaccgat tcctgcaaaacccgtaacaggtccgggagaggttataatttcggatctgaataaaacgaaaaaagacaatgaggttttaa gaacaaaggtagataaattacaaaacacattaaaagagatggaagcgatacagtataatttacaggatgaatacaggcga gccaaggtggccgtggaaaccacacagaagtcgatggaaacagtgcttaaagactataaacaaatggaagtcaacctgac gagcgccaagacagaaaatgatagccttaaacaaaaattgacaaagagcgtgaagccgatgatgcgggcagacaatcgcc tggtagagaacatcagtgagaagtgtcgcccgtctaacatcgccctgagctacgactcactcgagagccaggcgtggatg gacgccaaggaggcgctggaggagaccacggactttgaggaggacgatattgtacagttcttgtgcgcatgcgtcatgtc tgcattccattcaagtaaagaagtatatgacgtcatgaaagctacgattgctgaactactacgtaaacccacattagcga tgagtaaaagttttataggacagagtaacggtaaatccaagctgccagacgacatgacggatagcgttggtcaacagtta cgtcagcactttgacgagatagacaccgaagtcattgtctgtgccacgaccgaaaagcttactttagagttcacggaatt catcgcgcgccaggctcatgaaaacaaacacggagaaacggaagaagaagcgcagcgcgatcacgaccgtaacttcattc accttttggagagatgccgtcagcgtaacataaaactcaatcaagataaaatgaaattcagacagagggatgcaaaattt ataggacatatcatcacaccaaggggattaaaagctgaccctgataaagtgcgtgccgtcctagaaatgccgaaccctgt gaatgttgcaggtgttcgccgattcgttggattcgtaacatatctagccaagtttctgccaaagcttagcgaaatctgtg agccactacgcagattgactcaaaagaatgtacaatggcactggactgacctacacgaaaaggcaataagcaaagtaaag cagctagtaacgtccaatccgctcctgcagtactttcaacccggcaagaaagtaacactgcagtgtgatgcgtcagagaa aggacttatnccactacgtagattgactcaaaagaatgtagaatggcactggactgaccaacacgaaaaggcaacaagca aaacatggtattccggacacgtttccgataatggaccgcaatttgcatccgaggagttccgagatttcgcgcaacgatgg aagtttgagcacataacgtcctcccctcactatccgcaaagtaatggcaaggcagaacaggcagtgaaagttgcaaaaca aataatgcgaaaagcaaaacactcgaaatccgatccgtaccttgccatcttggattaccgcaatacgccaacacaacatc tgggcatgagtcctgctcagcgcctgatgaaccgccgaacgaaaaccctgctaccaacgaaaggggagctattacaatcc gacaacaacgggatagcgggactacaaagaaaattcgaagctgccaaagcaaaacaggcagaatactttaatcgatcgtc tcgctcattacctacactgaaacctggagatttggtacgtgtgaaaacgcctgacaaaccatggcagaaaggcactgtta tctcagggcctgaaaatcactcgtatcacgtcgaaactgaacgaggaggaatatatcgacgtaacagacgccatatccgt agatcttctgaatctacagtcacaccccgttccagtgaggaagattttgaagtagaagcatctgccgagccgatatcaca accaatatccgaaccgaacgtatccgctctaaacacggcagactcagtaccggtacctaaaggtctacaaatcgtaaccc gatctggacgcatctccaaacaatctgcgatcgagatccaagactatgttcaaatgataatgcatgagtga |
|
Protein
| Protein ID | pfu_aug2.0_210.1_00441.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_210.1_00441.t1 MATGALKKRDLMAEAKKFCDSLSNVFMHKKRDPQTQHLLEQAKALIEALVSENQKYAVDPRSSSPRGTSRSGGGMGQLWV KLDELKRENEALRKKREKLAPGEKPPIPAKPVTGPGEVIISDLNKTKKDNEVLRTKVDKLQNTLKEMEAIQYNLQDEYRR AKVAVETTQKSMETVLKDYKQMEVNLTSAKTENDSLKQKLTKSVKPMMRADNRLVENISEKCRPSNIALSYDSLESQAWM DAKEALEETTDFEEDDIVQFLCACVMSAFHSSKEVYDVMKATIAELLRKPTLAMSKSFIGQSNGKSKLPDDMTDSVGQQL RQHFDEIDTEVIVCATTEKLTLEFTEFIARQAHENKHGETEEEAQRDHDRNFIHLLERCRQRNIKLNQDKMKFRQRDAKF IGHIITPRGLKADPDKVRAVLEMPNPVNVAGVRRFVGFVTYLAKFLPKLSEICEPLRRLTQKNVQWHWTDLHEKAISKVK QLVTSNPLLQYFQPGKKVTLQCDASEKGLXPLRRLTQKNVEWHWTDQHEKATSKTWYSGHVSDNGPQFASEEFRDFAQRW KFEHITSSPHYPQSNGKAEQAVKVAKQIMRKAKHSKSDPYLAILDYRNTPTQHLGMSPAQRLMNRRTKTLLPTKGELLQS DNNGIAGLQRKFEAAKAKQAEYFNRSSRSLPTLKPGDLVRVKTPDKPWQKGTVISGPENHSYHVETERGGIYRRNRRHIR RSSESTVTPRSSEEDFEVEASAEPISQPISEPNVSALNTADSVPVPKGLQIVTRSGRISKQSAIEIQDYVQMIMHE |
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