Gene
| Gene Model ID | pfu_aug2.0_2106.1_21940 |
|---|---|
| Locus | scaffold2106.1 : 99122 ... 114324 : - |
| To GenomeBrowser | scaffold2106.1:99122..114324 |
| Genes list of scaffold | scaffold2106.1 |
| Synonym | pfu_aug1.0_3401.1_66672 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trna (cytosine -c )-methyltransferase | GO:0003723 GO:0008152 GO:0016740 GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2106.1_21940.t1 | 3 | 1 | Nol1_Nop2_Fmu | 62 | 247 | 2.1e-34 | 119.2 | 1.5e-31 | 5.4e-28 | 98.1 |
| pfu_aug2.0_2106.1_21940.t1 | 3 | 2 | Nol1_Nop2_Fmu | 290 | 336 | 2.1e-34 | 119.2 | 4.9e-07 | 0.0018 | 17.6 |
| pfu_aug2.0_2106.1_21940.t1 | 3 | 3 | Nol1_Nop2_Fmu | 468 | 524 | 2.1e-34 | 119.2 | 0.34 | 1300.0 | -1.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2106.1_21940.t1 | gi|524879279|ref|XP_005096317.1| | PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2106.1_21940.t1 | gi|514787968|ref|XP_005029391.1| | PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase, partial [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_2106.1_21940.t1 | gi|213627328|gb|AAI71126.1| | NOL1/NOP2/Sun domain family, member 2 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_2106.1_21940.t1 | gi|62857697|ref|NP_001015962.1| | tRNA (cytosine(34)-C(5))-methyltransferase [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_2106.1_21940.t1 | gi|554854291|ref|XP_005937341.1| | PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase-like isoform X1 [Haplochromis burtoni] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2106.1_21940.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2106.1_21940.t1 atgagaaacatcataaaaacagagtttatcagtgacttactggggaaggatgaggatggaaaacaacctgtaacctacct taactggtatcctgatgaacttgcttggcagctgaactcatcaagacaggaggtcaggagggatccacgtctcgaaaaac tcaaagacttcctctttcaagaaacggagagtggtaatataagtcgacaggaagcggtttcaatgatacccccactagta atggacattaaaccacatcataaggtattggacatgtgtgcagcaccaggatctaagacagctcagattatagagtatct acatcgtacagagaatgggaaattaccagacggttttgtgatagcaaatgatgtagataataaacggtgttaccttatga ctcatcaagtaaaacgacttcagagtccatgctgtgcaatcgtcaaccatgatgcatctgtcatacccaaactaaaacat ggggatggtgctggggacttcatttactatgatagagtactgtgtgatgtgccgtgcagtggggatggaactttaagaaa aaactgtgatatctgggacaaatggactcccaacaacgctgttagtctgcatacgatacagagtaagattttgaagagag gattagagctactgtgtgagggagggagactggtatattctacatgttccctgaatcctatagaggatgaagctgttgtt ggagccatgctgaaaaaatgtgaagggtcagttgagctagtggatgcaagtgatttggtacctggattgaagtatacaaa gggcattaactcatggaaggtatttgtacgagactgcagcaaatcgtttgagacttttgaatcgataccaaagggatctt actcacactatctacccaccatgtttcctttaccaacagaggaaagtcagaaactaaacttagatagatgcatgagagtg ttaccccatcagcagaatacgggaggtttctttatagctgtccttcaaaaaaccacaaatctaccatggcataaaccatc tacttctcaagccactaaacctgagaatagcagcatagagacgaaatcacaggaaaccgataatgtaccaaaggaaagct cgggggagagtaccgagaaaaatgaagaggggacgacagggaaagacgatcagaaacctgacgacaaccaggcacaaagt gggaaaaggaaagcagaggatgagggaactaatcccaagcccccaaagcacatcgccaagaagatgtacggctataaaga agatccttatatattcctggaggaagatgataacatgtggaatcctatcaaggatttcttcggtatacctaatgatttct gtaaaacccaagtgatgcacagaacggagaccggcaaacggaggacattatactatgtggcgtcaattctcaaagacgtg atacaaacaaacaaggaccgtgtaaagtttatcaaccttggtattaagatatttggtcgcagcccctcaccattggtacc agaatgtgacttcagaattactcaagagggactgttagtaatgaaggagtacctaccggctcgctgtgcggtcctctcta acaaagacatgttcacactgatactgaacgacaacccccatcttaatgacttctctacggacgggaaagaacagcttgaa aaaatcaccgctggtagtatggtgttctggtttaagccaacagaaagtgacccgcacccagactgtgacgtggttatttg tggatggagaggaaagacctctgtgcgagcattcctgaaccaaggtctcaaattccactatctacgactgctaaatctcc acctggcagaggaatacattgagaaaaagagggaaaagaaaagacaaaaggagagagaagaatttggtgagaaaatcgaa caaggacgttcttcagatgacattactgatcttcaagaagaggagagttcacctcaaagggagactacatgtgaagatga aattatggaagatattcaagaagaggaagaaataaaagacgatcagaatgaagacattataaataaagatgatgttgtag ctgaagaaactagtaaaatctcagatactgacggagctgtcagctag |
|
Protein
| Protein ID | pfu_aug2.0_2106.1_21940.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2106.1_21940.t1 MRNIIKTEFISDLLGKDEDGKQPVTYLNWYPDELAWQLNSSRQEVRRDPRLEKLKDFLFQETESGNISRQEAVSMIPPLV MDIKPHHKVLDMCAAPGSKTAQIIEYLHRTENGKLPDGFVIANDVDNKRCYLMTHQVKRLQSPCCAIVNHDASVIPKLKH GDGAGDFIYYDRVLCDVPCSGDGTLRKNCDIWDKWTPNNAVSLHTIQSKILKRGLELLCEGGRLVYSTCSLNPIEDEAVV GAMLKKCEGSVELVDASDLVPGLKYTKGINSWKVFVRDCSKSFETFESIPKGSYSHYLPTMFPLPTEESQKLNLDRCMRV LPHQQNTGGFFIAVLQKTTNLPWHKPSTSQATKPENSSIETKSQETDNVPKESSGESTEKNEEGTTGKDDQKPDDNQAQS GKRKAEDEGTNPKPPKHIAKKMYGYKEDPYIFLEEDDNMWNPIKDFFGIPNDFCKTQVMHRTETGKRRTLYYVASILKDV IQTNKDRVKFINLGIKIFGRSPSPLVPECDFRITQEGLLVMKEYLPARCAVLSNKDMFTLILNDNPHLNDFSTDGKEQLE KITAGSMVFWFKPTESDPHPDCDVVICGWRGKTSVRAFLNQGLKFHYLRLLNLHLAEEYIEKKREKKRQKEREEFGEKIE QGRSSDDITDLQEEESSPQRETTCEDEIMEDIQEEEEIKDDQNEDIINKDDVVAEETSKISDTDGAVS |
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