Gene
| Gene Model ID | pfu_aug2.0_2109.1_32052 |
|---|---|
| Locus | scaffold2109.1 : 103076 ... 111935 : + |
| To GenomeBrowser | scaffold2109.1:103076..111935 |
| Genes list of scaffold | scaffold2109.1 |
| Synonym | pfu_aug1.0_18273.1_54476 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2109.1_32052.t1 | 1 | 1 | adh_short | 4 | 134 | 3.0e-07 | 30.5 | 4.7e-10 | 5.8e-07 | 29.5 |
| pfu_aug2.0_2109.1_32052.t1 | 1 | 1 | Epimerase | 6 | 265 | 0.0 | 164.0 | 0.0 | 0.0 | 163.8 |
| pfu_aug2.0_2109.1_32052.t1 | 2 | 1 | Polysacc_synt_2 | 6 | 184 | 8.0e-12 | 44.6 | 1.4e-13 | 1.7e-10 | 40.2 |
| pfu_aug2.0_2109.1_32052.t1 | 1 | 1 | RmlD_sub_bind | 6 | 284 | 1.2e-11 | 44.0 | 2.2e-14 | 2.8e-11 | 42.8 |
| pfu_aug2.0_2109.1_32052.t1 | 1 | 1 | NAD_binding_10 | 6 | 198 | 4.0e-09 | 36.7 | 5.0e-12 | 6.2e-09 | 36.1 |
| pfu_aug2.0_2109.1_32052.t1 | 2 | 1 | 3Beta_HSD | 7 | 161 | 1.6e-12 | 46.6 | 2.6e-15 | 3.3e-12 | 45.7 |
| pfu_aug2.0_2109.1_32052.t1 | 1 | 1 | NAD_binding_4 | 8 | 194 | 9.7e-10 | 37.7 | 3.2e-11 | 4.0e-08 | 32.5 |
| pfu_aug2.0_2109.1_32052.t1 | 2 | 1 | Epimerase_Csub | 47 | 58 | 1.8e-28 | 98.2 | 2.0 | 2400.0 | -1.5 |
| pfu_aug2.0_2109.1_32052.t1 | 2 | 2 | 3Beta_HSD | 233 | 255 | 1.6e-12 | 46.6 | 2.1 | 2600.0 | -3.2 |
| pfu_aug2.0_2109.1_32052.t1 | 2 | 2 | Polysacc_synt_2 | 258 | 285 | 8.0e-12 | 44.6 | 0.68 | 840.0 | -1.4 |
| pfu_aug2.0_2109.1_32052.t1 | 2 | 2 | Epimerase_Csub | 278 | 339 | 1.8e-28 | 98.2 | 5.4e-31 | 6.7e-28 | 96.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2109.1_32052.t1 | gi|291235297|ref|XP_002737585.1| | PREDICTED: UDP-glucose 4-epimerase-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2109.1_32052.t1 | gi|148698015|gb|EDL29962.1| | galactose-4-epimerase, UDP, isoform CRA_c [Mus musculus] | 0.0 |
| pfu_aug2.0_2109.1_32052.t1 | gi|30409988|ref|NP_848476.1| | UDP-glucose 4-epimerase [Mus musculus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2109.1_32052.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2109.1_32052.t1 atgagtaaagggagtatactcctgacaggaggggcggggtttgtaggcagccatactgtaatagagtttatccaagcagg atattctgttgtagtcttggacaaccttgtcaatgcaagcatggagagcataaaacgagttgaaaaaataacaggtaaag aaattccagccgtcaatgtggatttactgaacaaagaggcattaacagatttattttctaaacacaagtttactagcgtg gttcactttgccggcctgaaggctgttggagaatcttgtcagttacccctcctttactaccatactaatataggagcaac catcaatctgttagaggtgatgaaatcttttgatgtgaagaatatgattttctcaagttctgccactgtatacggtactc cgcagtatttacctatagacgaaaaacatcctgttggtggctgtaccaacccatacggcaaaacaaaatacttcattgaa gaaatcctcagagacctagccaaggcagaacctgactggaacattgttatacttcgttactttaatcctgtgggggccca tgagtctggtcaaataggtgaggatccacagggtgtgcccaataatcttatgccatttatctcacaagtagccgtaggta aaaggaaggaattgaacgtttacggtgatgattacgacacacctgatggtacaggagtaagagactatatacatgtggtg gatttagctaaaggtcatgtggcagctcagacaaaaatagaaactaaatgtggatgtaaggtctataatttggggactgg gaaaggttattctgtgatagaaatggccaaagctctagagaaagcttcaggaaaacctgtgccatataaggtatgtcctc gtcgtgagggtgatgtgggatcggtgtacggtaatgcagacctggctaaagaagagcttggctggactgccactaaggga ctagatgatatgtgcaaagatctatggcgctggcagtcaatgaatccaaatggtttccgtggcaatagttaa |
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Protein
| Protein ID | pfu_aug2.0_2109.1_32052.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2109.1_32052.t1 MSKGSILLTGGAGFVGSHTVIEFIQAGYSVVVLDNLVNASMESIKRVEKITGKEIPAVNVDLLNKEALTDLFSKHKFTSV VHFAGLKAVGESCQLPLLYYHTNIGATINLLEVMKSFDVKNMIFSSSATVYGTPQYLPIDEKHPVGGCTNPYGKTKYFIE EILRDLAKAEPDWNIVILRYFNPVGAHESGQIGEDPQGVPNNLMPFISQVAVGKRKELNVYGDDYDTPDGTGVRDYIHVV DLAKGHVAAQTKIETKCGCKVYNLGTGKGYSVIEMAKALEKASGKPVPYKVCPRREGDVGSVYGNADLAKEELGWTATKG LDDMCKDLWRWQSMNPNGFRGNS |
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