Gene
| Gene Model ID | pfu_aug2.0_211.1_03804 |
|---|---|
| Locus | scaffold211.1 : 308120 ... 317054 : + |
| To GenomeBrowser | scaffold211.1:308120..317054 |
| Genes list of scaffold | scaffold211.1 |
| Synonym | pfu_aug1.0_12372.1_39321 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_211.1_03804.t1 | 3 | 1 | Aconitase | 1 | 39 | 0.0 | 189.2 | 1.3e-07 | 0.00062 | 18.3 |
| pfu_aug2.0_211.1_03804.t1 | 3 | 2 | Aconitase | 40 | 94 | 0.0 | 189.2 | 1.3e-24 | 6.4e-21 | 74.3 |
| pfu_aug2.0_211.1_03804.t1 | 3 | 3 | Aconitase | 95 | 190 | 0.0 | 189.2 | 1.3e-30 | 6.3e-27 | 94.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_211.1_03804.t1 | gi|551525953|ref|XP_005814454.1| | PREDICTED: aconitate hydratase, mitochondrial-like [Xiphophorus maculatus] | 0.0 |
| pfu_aug2.0_211.1_03804.t1 | gi|432921469|ref|XP_004080165.1| | PREDICTED: aconitate hydratase, mitochondrial [Oryzias latipes] | 0.0 |
| pfu_aug2.0_211.1_03804.t1 | gi|617360223|ref|XP_007559829.1| | PREDICTED: aconitate hydratase, mitochondrial-like [Poecilia formosa] | 0.0 |
| pfu_aug2.0_211.1_03804.t1 | gi|658906725|ref|XP_008436091.1| | PREDICTED: aconitate hydratase, mitochondrial [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_211.1_03804.t1 | gi|734604058|ref|XP_010729067.1| | PREDICTED: aconitate hydratase, mitochondrial-like [Larimichthys crocea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_211.1_03804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_211.1_03804.t1 atggcgatgttacagtttatatccagtggcttaccgagggtggctgtaccttccaccattcactgtgaccacttgattgc tgctgagactggtggaaaggaagatttagctagagcaaagattgttctggaaaattatgctttcccaggtgttttactga ttggaacagacagtcatacaccaaatggaggaggacttggaggattgtgtatcggtgtaggaggtgctgatgctgtagat gtcatggcaggtctaccctgggaacttaaatgtcccaaggttggtatgggaactatttgtaacatgggagctgagatagg ggccactacttcatgtttcccctacaacaacagaatggaggactacctcagggcaaccaatagatctgctgttgctgatt tggcaaacaaatacagaggattgctttcacctgatgtcaactgtaaatatgaccaagtcattgagattgatctaaataca ctggaaccccacgtaaatggccctttcactccagatctggctcatccaatctcaaagttaggacagacagctaaggaaaa ggactggccattggaaatcaaagttggatcaaaatttaagttagatagcccttacggtgacgagcttccagctaaaggat ttgatcccggacaggatacctaccaacctcctcctggtgatggatcaagtctcaatgtgaacgtagacccagaaagtaca agactacaacttctgtcaccattcgccaaatggaatggcaaggatctagaagatatggtagtcttgatcaaggtgaaagg aaaatgcactacagatcatatcagtgctgctggaccatggttaaaatacagaggtcacctcgataacatctctaataatc tactcattacgtag |
|
Protein
| Protein ID | pfu_aug2.0_211.1_03804.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_211.1_03804.t1 MAMLQFISSGLPRVAVPSTIHCDHLIAAETGGKEDLARAKIVLENYAFPGVLLIGTDSHTPNGGGLGGLCIGVGGADAVD VMAGLPWELKCPKVGMGTICNMGAEIGATTSCFPYNNRMEDYLRATNRSAVADLANKYRGLLSPDVNCKYDQVIEIDLNT LEPHVNGPFTPDLAHPISKLGQTAKEKDWPLEIKVGSKFKLDSPYGDELPAKGFDPGQDTYQPPPGDGSSLNVNVDPEST RLQLLSPFAKWNGKDLEDMVVLIKVKGKCTTDHISAAGPWLKYRGHLDNISNNLLIT |
|