Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_211.1_03807
Locus scaffold211.1 : 335490 ... 342731 : +
To GenomeBrowser scaffold211.1:335490..342731
Genes list of scaffold scaffold211.1
Synonym pfu_aug1.0_13782.1_18033

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_211.1_03807.t1 3 1 Abhydrolase_6 70 102 1.4e-06 28.4 1.9 2600.0 -2.0
pfu_aug2.0_211.1_03807.t1 1 1 COesterase 97 220 1.7e-15 56.7 1.8e-18 2.4e-15 56.2
pfu_aug2.0_211.1_03807.t1 2 1 Abhydrolase_3 114 207 3.5e-17 62.7 1.2e-19 1.7e-16 60.4
pfu_aug2.0_211.1_03807.t1 1 1 Abhydrolase_5 114 465 2.0e-11 43.8 3.3e-14 4.5e-11 42.7
pfu_aug2.0_211.1_03807.t1 3 2 Abhydrolase_6 153 203 1.4e-06 28.4 2.3e-05 0.031 14.1
pfu_aug2.0_211.1_03807.t1 2 1 Peptidase_S9 162 203 4.5e-10 39.0 3.8e-05 0.051 12.7
pfu_aug2.0_211.1_03807.t1 2 2 Peptidase_S9 360 464 4.5e-10 39.0 1.4e-08 1.8e-05 24.0
pfu_aug2.0_211.1_03807.t1 2 2 Abhydrolase_3 389 464 3.5e-17 62.7 0.59 800.0 -0.6
pfu_aug2.0_211.1_03807.t1 3 3 Abhydrolase_6 425 465 1.4e-06 28.4 0.00016 0.21 11.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_211.1_03807.t1 gi|524868488|ref|XP_005091046.1| PREDICTED: uncharacterized protein LOC101860469 [Aplysia californica] 0.0
pfu_aug2.0_211.1_03807.t1 gi|676485043|ref|XP_009063533.1| hypothetical protein LOTGIDRAFT_130315 [Lottia gigantea] 0.0
pfu_aug2.0_211.1_03807.t1 gi|675874184|ref|XP_009022652.1| hypothetical protein HELRODRAFT_106899 [Helobdella robusta] 0.0
pfu_aug2.0_211.1_03807.t1 gi|498968947|ref|XP_004547032.1| PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICME [Maylandia zebra] 9.80909e-45
pfu_aug2.0_211.1_03807.t1 gi|548399019|ref|XP_005738233.1| PREDICTED: probable isoprenylcysteine alpha-carbonyl methylesterase ICMEL1-like [Pundamilia nyererei] 1.96182e-44

Transcript
Transcript IDpfu_aug2.0_211.1_03807.t1
Definition-
>pfu_aug2.0_211.1_03807.t1
atgcttcaaaaattaacaaaaggaattatgttccttgcgacaatggttgctgtcccatacacagtagccttgttgtctaa
cattctgtatggatggccagcaagaaagaacaaatttaaacgagcactcagtccccgtaaagttctagccttgaactaca
cctgtcttcaactggtgtatcgcaatttcaaatatgcacctctatggctgcgctggacaaaattttataggagcttggat
cctaaatttgtgaggaagaatttagcctatggtagccacgaacaaacaatggacctttacctaccacaaggagttgacct
atcacagccacgccctgtggtggtatttatctatggtggagcctggtctaacggcaataaaaagatgtacggacttctgt
gctcagagattgccaataagctgagaagtttggtgtgctgtccaaactattcattatatcctcagggatatgtagatgac
atggtacaggatgtggtggattgtgtcagctggatccaccagaatgtggcagagtatggtggagataaggaaaatatatt
gctggttgggcattcagctggtgcacatctgtgtgtgatggcagtgctagagttactacatgacaaaattatgcaatctt
cagatgcaacatctgacctagagagtctacgcattgaatttgaggagtcacatttcaatggtactcagcctaagaacaac
agacttgataagttagaacaaagttcaggatcaagtgcatcatttgtagttctgaacaatgataaagacaacggggagag
tgtagattctgtgaatggaaaagacagaggtgtgttgagagactctcggcagttcgattctgaattaatgggtgtggtaa
gagatgatgtgactgatcagtcagtgttaaaagatcaaaaggaggtagacagtatagaagaatcattgatagtagttaaa
gcggatgagggggatgaagtcatcgatgacactatagaggaaataaatagtgatgatagctctgtggaaactgtgctacc
aaatgatgcagagaaaagtcagtctttggccgagttaggagagaagatcaaagctgttataggtctagcaggtgtatatg
atataagcgatcactttcaacatgagatgagcaggggtattgaggatgtatcacgtatgacaagggccatgtatggagag
gaccactttgatcgcttctcaccttctatattatgtcagaatatagtcaatggttcatgtttgcccaaatttgttctagt
ccacggcacggaggaccatgttgttcctttaacatcgacaacaaaattagctgaagttttaacagacaaatttgctgata
taactgtcagaattctcccaggctgtgatcactatgaagtttgtttagacctgatggaaccaaatcgtaaatgttacgga
tctgttatgggaattataatggaaactgctacaaaagctctaaaaaagattatcataaatatctag

Protein
Protein IDpfu_aug2.0_211.1_03807.t1
Definition-
>pfu_aug2.0_211.1_03807.t1
MLQKLTKGIMFLATMVAVPYTVALLSNILYGWPARKNKFKRALSPRKVLALNYTCLQLVYRNFKYAPLWLRWTKFYRSLD
PKFVRKNLAYGSHEQTMDLYLPQGVDLSQPRPVVVFIYGGAWSNGNKKMYGLLCSEIANKLRSLVCCPNYSLYPQGYVDD
MVQDVVDCVSWIHQNVAEYGGDKENILLVGHSAGAHLCVMAVLELLHDKIMQSSDATSDLESLRIEFEESHFNGTQPKNN
RLDKLEQSSGSSASFVVLNNDKDNGESVDSVNGKDRGVLRDSRQFDSELMGVVRDDVTDQSVLKDQKEVDSIEESLIVVK
ADEGDEVIDDTIEEINSDDSSVETVLPNDAEKSQSLAELGEKIKAVIGLAGVYDISDHFQHEMSRGIEDVSRMTRAMYGE
DHFDRFSPSILCQNIVNGSCLPKFVLVHGTEDHVVPLTSTTKLAEVLTDKFADITVRILPGCDHYEVCLDLMEPNRKCYG
SVMGIIMETATKALKKIIINI

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495