Gene
| Gene Model ID | pfu_aug2.0_211.1_03809 |
|---|---|
| Locus | scaffold211.1 : 367973 ... 382427 : + |
| To GenomeBrowser | scaffold211.1:367973..382427 |
| Genes list of scaffold | scaffold211.1 |
| Synonym | pfu_aug1.0_33751.1_48125 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rho gtpase-activating protein 24 isoform x1 | GO:0005515 GO:0005829 GO:0005912 GO:0007275 GO:0009653 GO:0035020 GO:0048523 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_211.1_03809.t1 | 2 | 1 | PH | 11 | 113 | 1.0e-15 | 57.7 | 1.2e-17 | 1.8e-14 | 53.7 |
| pfu_aug2.0_211.1_03809.t1 | 2 | 1 | RhoGAP | 142 | 206 | 2.4e-17 | 62.9 | 5.8e-20 | 8.6e-17 | 61.1 |
| pfu_aug2.0_211.1_03809.t1 | 2 | 2 | PH | 372 | 406 | 1.0e-15 | 57.7 | 0.23 | 340.0 | 1.5 |
| pfu_aug2.0_211.1_03809.t1 | 2 | 2 | RhoGAP | 465 | 516 | 2.4e-17 | 62.9 | 0.32 | 470.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_211.1_03809.t1 | gi|28839072|gb|AAH47918.1| | ARHGAP24 protein [Homo sapiens] | 0.0 |
| pfu_aug2.0_211.1_03809.t1 | gi|119626365|gb|EAX05960.1| | Rho GTPase activating protein 24, isoform CRA_b [Homo sapiens] | 0.0 |
| pfu_aug2.0_211.1_03809.t1 | gi|699676398|ref|XP_009885857.1| | PREDICTED: rho GTPase-activating protein 24-like, partial [Charadrius vociferus] | 0.0 |
| pfu_aug2.0_211.1_03809.t1 | gi|111154092|ref|NP_001020787.2| | rho GTPase-activating protein 24 isoform 1 [Homo sapiens] | 0.0 |
| pfu_aug2.0_211.1_03809.t1 | gi|403263409|ref|XP_003924026.1| | PREDICTED: rho GTPase-activating protein 24 isoform X1 [Saimiri boliviensis boliviensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_211.1_03809.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_211.1_03809.t1 atgaataatccacttcacagacagcggattatgaaatgtggatggctgaagaagcagggaggaatggtcaaaacatggca tcgacgatggttttgtcttaatggagactgcttgttctatttctccaaagaagatgatctcaaacctttaggatcaatat tcctgcctggaaatcgtgtgtcggaaattccttttaatcctgaggatccggaaaagtttctgtttgaagtctatccaggt aaaatgcagagtaagatgaccccaaaccatgattccttcttgttatgggcggccacggacttggaacggcaaaactggat taagatcatcagaaaggtcatgttctcatcctttggaggagctatcttcggacagagcatagaagagaccatggaatatg aacgtaggaatggaaggaagataccatatgttgttgaaaaatgcattgaatttctggaaatctatggtttagatactgag ggaatattcagattacctggaagaagtctgctgatcaaagaattgaaagataaattggattgtgcagaaaaggttgtgtt tgatatctcacaagtggacgtacatactgtggcgtcgttactgaaactttacttcccgactgtatttggtccaaatatgg tgcgtaatgtgtctgaagcagacagtgccgaattaatgatggcaactgcagacatcactcagcaacttgcgtatatgatg atcttttacaacaaagaggtgtttgagaaggaggtcaagccgtcggatgctgaagatggatcgtccaagggtgaagtacc cgtagatgatttattaggtatcggtagcggggatgatgcatttaatgatgatgtactcatgccggccaggataggaagta gcttaatggatcaagtgaccagagaactgcaggggataaattttaatggtgatggtagcttctctcctacagatgagaat gttgtaacgttacgaaacagtacgcatagggaagggtcatcaaaggagggatcacctgttcaggatgtgcgaccggctcg tcctgtccctcctgaacggaagactaggatgaacaaaataatgagaaataaaagatctggaagtgcaaaaaacagagagc ttattttatcgtctacatcttctacaacaagtgaggattccacaaactatacaactgtacaagaggaacatagaaaaatg cattacttggaaacaaattttgacgaaaacagtgtgaatggaaacaatggaaagaatgataacgaaaacagtgtgccgaa aaggactgaaacagcagagcagtggttagagagggaactcaatgaaacaaaggacaggtatgagaaagagattgctagat taaacgagaagttggagcagcagaataaaacgtcacaaactcggttttccgaaatgaaagccaaatatgacagacaggta aaagaactgaacaagaatatgtcagtgatcacaagtcgatatgaaagcaggatagcctcaatagatgcagttcataaaga ctctatcaggaagatagaggaaaagctggatgcagaacagaaatcacgagaagatgcagtgaaaagagtgataaacctac aggcagagctgcagaggctacataatataccgataaaacgtcaaattccttga |
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Protein
| Protein ID | pfu_aug2.0_211.1_03809.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_211.1_03809.t1 MNNPLHRQRIMKCGWLKKQGGMVKTWHRRWFCLNGDCLFYFSKEDDLKPLGSIFLPGNRVSEIPFNPEDPEKFLFEVYPG KMQSKMTPNHDSFLLWAATDLERQNWIKIIRKVMFSSFGGAIFGQSIEETMEYERRNGRKIPYVVEKCIEFLEIYGLDTE GIFRLPGRSLLIKELKDKLDCAEKVVFDISQVDVHTVASLLKLYFPTVFGPNMVRNVSEADSAELMMATADITQQLAYMM IFYNKEVFEKEVKPSDAEDGSSKGEVPVDDLLGIGSGDDAFNDDVLMPARIGSSLMDQVTRELQGINFNGDGSFSPTDEN VVTLRNSTHREGSSKEGSPVQDVRPARPVPPERKTRMNKIMRNKRSGSAKNRELILSSTSSTTSEDSTNYTTVQEEHRKM HYLETNFDENSVNGNNGKNDNENSVPKRTETAEQWLERELNETKDRYEKEIARLNEKLEQQNKTSQTRFSEMKAKYDRQV KELNKNMSVITSRYESRIASIDAVHKDSIRKIEEKLDAEQKSREDAVKRVINLQAELQRLHNIPIKRQIP |
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