Gene
| Gene Model ID | pfu_aug2.0_2118.1_28680 |
|---|---|
| Locus | scaffold2118.1 : 99309 ... 101905 : - |
| To GenomeBrowser | scaffold2118.1:99309..101905 |
| Genes list of scaffold | scaffold2118.1 |
| Synonym | pfu_aug1.0_5920.1_23918 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2118.1_28680.t1 | 1 | 1 | TFIID_20kDa | 92 | 154 | 2.7e-28 | 98.0 | 1.6e-31 | 4.0e-28 | 97.4 |
| pfu_aug2.0_2118.1_28680.t1 | 1 | 1 | CBFD_NFYB_HMF | 92 | 150 | 5.0e-06 | 26.4 | 3.0e-09 | 7.5e-06 | 25.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2118.1_28680.t1 | gi|676487419|ref|XP_009064287.1| | hypothetical protein LOTGIDRAFT_58640, partial [Lottia gigantea] | 1.0e-31 |
| pfu_aug2.0_2118.1_28680.t1 | gi|683448449|gb|KFZ46859.1| | Transcription initiation factor TFIID subunit 12, partial [Caprimulgus carolinensis] | 1.0e-29 |
| pfu_aug2.0_2118.1_28680.t1 | gi|704307498|ref|XP_010164882.1| | PREDICTED: transcription initiation factor TFIID subunit 12 [Caprimulgus carolinensis] | 2.0e-29 |
| pfu_aug2.0_2118.1_28680.t1 | gi|213511973|ref|NP_001135281.1| | transcription initiation factor TFIID subunit 12 [Salmo salar] | 3.0e-29 |
| pfu_aug2.0_2118.1_28680.t1 | gi|410925076|ref|XP_003976007.1| | PREDICTED: transcription initiation factor TFIID subunit 12 [Takifugu rubripes] | 4.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_2118.1_28680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2118.1_28680.t1 atgattgcatcgcctagtggagtaaatctcagcagctcctcaaatagcattctgtctactggtgtttctcctggtggccg tacagatcccgtctcacatatatcggaacaagtcagaactatgaacaagttaccaggacaagatgggatacctttggtgg gtgtgtcgtccccctcactgggaattcagcagccacagcccgtcaccctcaggcagtcagcaccctcgtctatcccaagc agcagtacccagggggagagtaaggtgctggacaaaaggcggatccaggaacttgtcaaagaggtggatcctatggaaca gctagatgaggaagtggaggaggctttgctgagcatagcagatgattttatagacagcgtagtgacagcagcttgtcaga tagccaaacatagaaagtccaataccctggaggtcaaggacgtacagcttcatctaggtaagggtcacgatcagtcatag |
|
Protein
| Protein ID | pfu_aug2.0_2118.1_28680.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2118.1_28680.t1 MIASPSGVNLSSSSNSILSTGVSPGGRTDPVSHISEQVRTMNKLPGQDGIPLVGVSSPSLGIQQPQPVTLRQSAPSSIPS SSTQGESKVLDKRRIQELVKEVDPMEQLDEEVEEALLSIADDFIDSVVTAACQIAKHRKSNTLEVKDVQLHLGKGHDQS |
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