Gene
| Gene Model ID | pfu_aug2.0_2127.1_25309 |
|---|---|
| Locus | scaffold2127.1 : 28599 ... 32985 : - |
| To GenomeBrowser | scaffold2127.1:28599..32985 |
| Genes list of scaffold | scaffold2127.1 |
| Synonym | pfu_aug1.0_4809.1_08989 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2127.1_25309.t1 | 1 | 1 | C1q | 246 | 371 | 1.4e-23 | 83.3 | 3.2e-27 | 2.4e-23 | 82.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2127.1_25309.t1 | gi|632963407|ref|XP_007897862.1| | PREDICTED: collagen alpha-1(X) chain-like [Callorhinchus milii] | 8.0e-10 |
| pfu_aug2.0_2127.1_25309.t1 | gi|694626129|ref|XP_009483885.1| | PREDICTED: collagen alpha-2(VIII) chain-like [Pelecanus crispus] | 7.0e-09 |
| pfu_aug2.0_2127.1_25309.t1 | gi|432865245|ref|XP_004070488.1| | PREDICTED: complement C1q-like protein 4 [Oryzias latipes] | 8.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_2127.1_25309.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2127.1_25309.t1 atggggaccaattgtgccccactccttgccgacattttcctttactcgtacgaagctgaattcattcaagctttggtctc tgatgggaaaagatacttagcttctgatttcaacttcacttacagatacatagacgatgtgttgtccatcaataattcaa aattcacggattacctgagcaatatctatccttcagagcttgaagtcaaagaaactacagagacaaataattcagcatcc tatttggacataatgttgtcctacgacactgatggtcacatgaacacctcattctatgacaaacgtgacgacttcaattt cagcattacaaactttctttttctgagtagcaacatcccttcatcgccagcttatggcgtgttcatatctcagttgatac gctataccagagcaagaaccaaatatacggattttgttctgagagctaggcgtctttcagataagcttctcagccaggga tatgtttgtgaccgactaacatcgttactgaggaagttttacggtcgatatggggaactcgtcatacactatgatgtccc actctccagaatgacgattcatattctattgtcgactatttatctctttacagagatatctacccacaagtctgtgcaga ggaagttttctagacacgacaaactagaccttttgaaagagatcatcggtcgatactttcttcgagaagaaaaatatgat aatcatcgaagcgttgcatttgctgtaaagttgcgcagctccatgtcaggcgttcctaaaaatattgtcataaaatttga ggatgtggttacaaaccaagggaatgggtacgacaaggttacagggacattcacggccccggtatctggaacatacctct ttggttggcataccttggtaaataaaggagggaaggcacatgtccatctctttgtcaatggtgtagatacatggagaagt tatgctgacgaaccaggtaaagaatacgaacctacaagcgcaacagtagtactgcagttgaaaaaggatgccacagtgca actgagaactgcccacagtaatggaaattatatatatggagatggatacagcggatttacagggatcctggtcaacgcat aa |
|
Protein
| Protein ID | pfu_aug2.0_2127.1_25309.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2127.1_25309.t1 MGTNCAPLLADIFLYSYEAEFIQALVSDGKRYLASDFNFTYRYIDDVLSINNSKFTDYLSNIYPSELEVKETTETNNSAS YLDIMLSYDTDGHMNTSFYDKRDDFNFSITNFLFLSSNIPSSPAYGVFISQLIRYTRARTKYTDFVLRARRLSDKLLSQG YVCDRLTSLLRKFYGRYGELVIHYDVPLSRMTIHILLSTIYLFTEISTHKSVQRKFSRHDKLDLLKEIIGRYFLREEKYD NHRSVAFAVKLRSSMSGVPKNIVIKFEDVVTNQGNGYDKVTGTFTAPVSGTYLFGWHTLVNKGGKAHVHLFVNGVDTWRS YADEPGKEYEPTSATVVLQLKKDATVQLRTAHSNGNYIYGDGYSGFTGILVNA |
|