Gene
| Gene Model ID | pfu_aug2.0_2127.1_25310 |
|---|---|
| Locus | scaffold2127.1 : 54196 ... 93355 : + |
| To GenomeBrowser | scaffold2127.1:54196..93355 |
| Genes list of scaffold | scaffold2127.1 |
| Synonym | pfu_aug1.0_26900.1_47811 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2127.1_25310.t1 | 2 | 1 | Kringle | 59 | 93 | 3.9e-07 | 30.0 | 2.2 | 4000.0 | -2.1 |
| pfu_aug2.0_2127.1_25310.t1 | 6 | 1 | Ldl_recept_a | 118 | 125 | 4.1e-25 | 87.3 | 3.0 | 5500.0 | -2.7 |
| pfu_aug2.0_2127.1_25310.t1 | 2 | 2 | Kringle | 252 | 326 | 3.9e-07 | 30.0 | 2.6e-10 | 4.7e-07 | 29.7 |
| pfu_aug2.0_2127.1_25310.t1 | 1 | 1 | F5_F8_type_C | 401 | 512 | 1.1e-12 | 47.9 | 1.5e-15 | 2.9e-12 | 46.5 |
| pfu_aug2.0_2127.1_25310.t1 | 2 | 1 | CUB | 626 | 659 | 5.4e-18 | 65.0 | 0.0013 | 2.4 | 8.2 |
| pfu_aug2.0_2127.1_25310.t1 | 2 | 2 | CUB | 744 | 856 | 5.4e-18 | 65.0 | 8.8e-18 | 1.6e-14 | 53.8 |
| pfu_aug2.0_2127.1_25310.t1 | 6 | 2 | Ldl_recept_a | 946 | 981 | 4.1e-25 | 87.3 | 3.2e-12 | 6.0e-09 | 35.6 |
| pfu_aug2.0_2127.1_25310.t1 | 6 | 3 | Ldl_recept_a | 984 | 1021 | 4.1e-25 | 87.3 | 1.0e-09 | 1.9e-06 | 27.6 |
| pfu_aug2.0_2127.1_25310.t1 | 6 | 4 | Ldl_recept_a | 1058 | 1095 | 4.1e-25 | 87.3 | 0.017 | 31.0 | 4.5 |
| pfu_aug2.0_2127.1_25310.t1 | 6 | 5 | Ldl_recept_a | 1099 | 1134 | 4.1e-25 | 87.3 | 6.0e-08 | 0.00011 | 22.0 |
| pfu_aug2.0_2127.1_25310.t1 | 6 | 6 | Ldl_recept_a | 1140 | 1173 | 4.1e-25 | 87.3 | 1.1e-07 | 0.0002 | 21.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2127.1_25310.t1 | gi|260826279|ref|XP_002608093.1| | hypothetical protein BRAFLDRAFT_91429 [Branchiostoma floridae] | 1.4013e-45 |
Transcript
| Transcript ID | pfu_aug2.0_2127.1_25310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2127.1_25310.t1 atggacacctgtacctgtgtatgtcaacatggatacagtggatttctgtgtgaacaagttttggtccaaagtgagtggcc agagggcagtttctctttacctatgtccatgtttggatgtcctgaggaggacaacagaggctggtcatggggttacgtca acctaacactaccttcatccgcccctgcacagatctggaatgacgacaacatagaaaccattgaaccaaacattctgggc ccctattatctgcgctccttgcaacttaacttttgtaccaaacagagcatgcagggaaacacgggaagtacaaaagagga gtgggggaagggaaattattgtttactgaaagctgggtttcagtgcccgaatggttttgatgaaggacaaataagcatat ctgggtaccattacacggatgacgacagtggaggaaccctacccaacatcaccatgtctgacacatcactgaaaattatc ttctgctgtagggacgatggaaacgaacaaaatcccctgaaacttccgacacaattcccctttcatctctttctgggacc taccaacgagtcttgccaaacagttgaaggcatgctggtaaagaagaatctattttacatgactgacgtcaactctagct gggttttcacaggaaagtaccctaatgtggacaatataactcacacacagaggataggcattccattttgttattacact ccatacgctcggcgggaatgttattatgaagacgacgctggcgtgtcctataaaggcagggtcaatgtatcagaatcagg aaaaccttgtaggacctggtcagcttcatcgtcctattatgtcaactccagaaactggtatggagaatttgaggaaaatt tctgtagaaattatggggagtacggacgaacaacatcctacccagtttgtgtcatagatgatgacttgacaatggagaga tgtaacgtttctatttgtgatgctgaggatcctgacattcgtgtcatgggagcgaataaacctttctacaatatccccgg aacaggtccagagtatgcggcggacggactaattgtaaccacatgcggtcgtccactaggaatgattacaggaaacatct actcctaccagatagaagagtcttcagtacagtatgagggtgacatatactacatgaactataatgggcgtgtcctaaac ccaggaatagggtggtgttcaagttctggagacgggaatccttggttaatgattgacctgatagcgcctacaaaggtaca gggactgctgttacaaggctggaatgagggacagaaaaggaagttgataaggaaatttacattgtcatatggagtaaata aagggaaccttatcccttatgaagatccgataggacgtacgaagatttttcacctggacgaagcaatggcagccacctct atacaacgcttcatactgagcaatgaaatcatggcaagatttgtacgaatatatcctttcaggagtgaggacgaaagcgc atgtctaaagatggaagtactaggatgtcaaaagcaagctgtgagagacttgttttgcaaacctggttccacagactttg gtttcgatgaggtaaagagacacgcatggtggatggaggagcctctcgatgcgccttactataacgaaggggttccgtcc aaggaagcctgcagggatctctgccttcagaataattgcacgagcttattccatgatatatcaagtgatatatgcttgtt acatgaaggccacaggtataacccagagcactacggttggtgggtgaaaaatgtgcctaatctctccatatcctcccaca gactctgtttcagagaatttaaacgtgttgatgcctgcggggataccattgaaataaagagtaacgaatctgtaatgata acttcacctggagcaccccttatgtatgaacaaggactaaactgctcatggcgagttatactgggtgttttcgatgttaa tcctggatcctgtaaggacacgctgacaattcaaacatcaactgacgaaatatctgttgttgatcactcaaacgaagaac agtattcggaaacggtttttctctcttcaacacccgaaatctccattaacttgcttacgtgtttccaaagttccagtcaa ggacaaaactactttgagatcaaagcgtcgtctgaagatattcctggttgtaatatggttggtgaaggttgtgaagctag atgtaccgttccgacagcctacatttcctctgatcgtttcccttctaaatatgaggctggcgatagctgcgtttggacga tagagggaacttttggacaattcattgaacttgaaattataaacatagacgtacctgacggggatagctcttgctcgaaa tcctttgtagctgtgtatgacaccaatttgaaaggagaagagcgtttgattgacagatattgcaaagaacaaaggccata cgagaaaattctttcaagatggcagaaaatgaggatcgagtttagagcaagttccggtcttagtggaagaggtttcctgg gaaaatattctattagaagttttactcagacaaaggaaaatgtgacagattcagctttagacagacagatatttgaattt gtcagattatcttataggtacaaaaatcctactactggtatagcccagcctgacggtctgaccaatgaacggtgcaccag catcagtctttacagtatacacgaaatggatgattggaacgacattgcttgtgcatatgataggatcaggagcttcatct gtgaaaaggtggatgcatctgttatactaggtacagagtgtacttcaagtcagtttgaatgtgacaatggacagtgtata tctatatccctgtactgtgactttataccacaatgccaagatggatctgatgaaacattctgtggattttgtgacagtaa aagcttccagtgttacgatcagaaatgtattccacaatccttagtgtgtgacggatatgtagattgtagtggacgattct cggaagatgaaaatcaggattgtcagaactttgtccagcggtcttgcgcagactggtggtccttgggaaaacgacaaaac ggagaatacatgatcaacatgggaatacatgatctctccttcacatccacgggattcttatgtaggagtggagtaactgt acctattgagatgagatgccttcttgattatgacaaatatggagaggtcaaaggttgccgagatctttctcaccttgagg agtgtgaaacttttaagtgtcctagagattttgttaaatgcagagacagctattgtattggtgtcgaaatgatgtgtgat ggtaccaaaaactgtgcagaaggcgaggatgagattaattgtgagaattcaacttgtcctggactattcaagtgtaagga aagttcgatgtgcttggatatatcaaaagtatgtgatggcattagagactgtccaaataacgacgacgagtttacctgct ccatggactgtccccgtaactgttcatgcgatggactaagtctagactgtccagcatccttacccattgatatcagtcaa ataccaatgagcgcaagaaaaatggtcatttacaaagaaatatctattgccattgatgctaaaatacgaacacaacgaaa aaaccaagacgttgccatagctagaggactgtttctggtagttcttactgactttgtatgctggtttcctataggagtta tgggtctaatggcactatctggatgggcgatccctggtgaagtttacgcatggactgcagttttcattttgcctataaac tcagcattgaatccatttctgtatacattctccacaatcatcaaacaaagaggaatcggaggaagtatgcgtttttcgat gaaaagagtaaaatcagtttcaagcacaaatgtatcaacaatagatactgcatggactgatgtcttgggaaatgagatgt ttatttttggaggtagaaaagatgggctttattccctctcagaacatatgactgacaatttgctgtccataacggaaatg acatctttggtaaaacaattgacatgcgcaattgcatttttgcatgatcgcgggatggtacatggaaaattgaacgaaga gaacattattttgactttaaaaggaaaggaaatatcaacgatatcagtaaaagcaacaccaaaactagctgaggaggaaa acgacgtcaaagaggatatatttcatattggacagttaataagaaggttgctgcgacagcatcaacagaaacttgtgtta agcaagagtatttcttga |
|
Protein
| Protein ID | pfu_aug2.0_2127.1_25310.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2127.1_25310.t1 MDTCTCVCQHGYSGFLCEQVLVQSEWPEGSFSLPMSMFGCPEEDNRGWSWGYVNLTLPSSAPAQIWNDDNIETIEPNILG PYYLRSLQLNFCTKQSMQGNTGSTKEEWGKGNYCLLKAGFQCPNGFDEGQISISGYHYTDDDSGGTLPNITMSDTSLKII FCCRDDGNEQNPLKLPTQFPFHLFLGPTNESCQTVEGMLVKKNLFYMTDVNSSWVFTGKYPNVDNITHTQRIGIPFCYYT PYARRECYYEDDAGVSYKGRVNVSESGKPCRTWSASSSYYVNSRNWYGEFEENFCRNYGEYGRTTSYPVCVIDDDLTMER CNVSICDAEDPDIRVMGANKPFYNIPGTGPEYAADGLIVTTCGRPLGMITGNIYSYQIEESSVQYEGDIYYMNYNGRVLN PGIGWCSSSGDGNPWLMIDLIAPTKVQGLLLQGWNEGQKRKLIRKFTLSYGVNKGNLIPYEDPIGRTKIFHLDEAMAATS IQRFILSNEIMARFVRIYPFRSEDESACLKMEVLGCQKQAVRDLFCKPGSTDFGFDEVKRHAWWMEEPLDAPYYNEGVPS KEACRDLCLQNNCTSLFHDISSDICLLHEGHRYNPEHYGWWVKNVPNLSISSHRLCFREFKRVDACGDTIEIKSNESVMI TSPGAPLMYEQGLNCSWRVILGVFDVNPGSCKDTLTIQTSTDEISVVDHSNEEQYSETVFLSSTPEISINLLTCFQSSSQ GQNYFEIKASSEDIPGCNMVGEGCEARCTVPTAYISSDRFPSKYEAGDSCVWTIEGTFGQFIELEIINIDVPDGDSSCSK SFVAVYDTNLKGEERLIDRYCKEQRPYEKILSRWQKMRIEFRASSGLSGRGFLGKYSIRSFTQTKENVTDSALDRQIFEF VRLSYRYKNPTTGIAQPDGLTNERCTSISLYSIHEMDDWNDIACAYDRIRSFICEKVDASVILGTECTSSQFECDNGQCI SISLYCDFIPQCQDGSDETFCGFCDSKSFQCYDQKCIPQSLVCDGYVDCSGRFSEDENQDCQNFVQRSCADWWSLGKRQN GEYMINMGIHDLSFTSTGFLCRSGVTVPIEMRCLLDYDKYGEVKGCRDLSHLEECETFKCPRDFVKCRDSYCIGVEMMCD GTKNCAEGEDEINCENSTCPGLFKCKESSMCLDISKVCDGIRDCPNNDDEFTCSMDCPRNCSCDGLSLDCPASLPIDISQ IPMSARKMVIYKEISIAIDAKIRTQRKNQDVAIARGLFLVVLTDFVCWFPIGVMGLMALSGWAIPGEVYAWTAVFILPIN SALNPFLYTFSTIIKQRGIGGSMRFSMKRVKSVSSTNVSTIDTAWTDVLGNEMFIFGGRKDGLYSLSEHMTDNLLSITEM TSLVKQLTCAIAFLHDRGMVHGKLNEENIILTLKGKEISTISVKATPKLAEEENDVKEDIFHIGQLIRRLLRQHQQKLVL SKSIS |
|