Gene
| Gene Model ID | pfu_aug2.0_213.1_10448 |
|---|---|
| Locus | scaffold213.1 : 287943 ... 319841 : - |
| To GenomeBrowser | scaffold213.1:287943..319841 |
| Genes list of scaffold | scaffold213.1 |
| Synonym | pfu_aug1.0_5177.1_45129 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_213.1_10448.t3 | 8 | 1 | zf-C2HC | 113 | 138 | 0.0 | 230.1 | 0.02 | 150.0 | 2.2 |
| pfu_aug2.0_213.1_10448.t3 | 8 | 2 | zf-C2HC | 359 | 381 | 0.0 | 230.1 | 2.7e-14 | 2.0e-10 | 40.1 |
| pfu_aug2.0_213.1_10448.t3 | 8 | 3 | zf-C2HC | 424 | 453 | 0.0 | 230.1 | 7.6e-19 | 5.6e-15 | 54.7 |
| pfu_aug2.0_213.1_10448.t3 | 8 | 4 | zf-C2HC | 736 | 745 | 0.0 | 230.1 | 0.55 | 4100.0 | -2.4 |
| pfu_aug2.0_213.1_10448.t3 | 8 | 5 | zf-C2HC | 803 | 831 | 0.0 | 230.1 | 9.7e-19 | 7.2e-15 | 54.4 |
| pfu_aug2.0_213.1_10448.t3 | 8 | 6 | zf-C2HC | 842 | 872 | 0.0 | 230.1 | 2.1e-20 | 1.5e-16 | 59.7 |
| pfu_aug2.0_213.1_10448.t3 | 8 | 7 | zf-C2HC | 893 | 899 | 0.0 | 230.1 | 0.077 | 570.0 | 0.3 |
| pfu_aug2.0_213.1_10448.t3 | 8 | 8 | zf-C2HC | 930 | 957 | 0.0 | 230.1 | 2.0e-17 | 1.5e-13 | 50.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_213.1_10448.t3 | gi|697480559|ref|XP_009672324.1| | PREDICTED: myelin transcription factor 1-like protein isoform X13 [Struthio camelus australis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_213.1_10448.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_213.1_10448.t1 atgacaaccctacattttggagatgatggaaagataatggtcgttggcagtggaggagaaattacatcagaaaatgttga ggtaaaaaatgaagaatacctggacatggaaggagaggagaatgtgtctgtgggaaaagattgtcttatcataacctccg atgatgggaaaagtgaaatattgaaactagacgtccccattctacagtacgagaatgcggaggaggctggtataggagga gggccgctgatggtcggtggaggagttcttacaaaggaggacatggaacaagatattgacatgagttcacccaagaaagc aacaatagaaacaatgtgtacatttcctggatatactggggaagagcaaatcacaggggaatttatacagcatggctcct cgcaaaactgtccccaaaatgctgccaagaaaaggaagctagatgatgatgaagatgacgagaaagaaagtgtgcaaaaa tgtctgagattgaatgacggtgaatttgtgacagatgacacggaaataaaagcagaggatgtgatagacatatccctgat atctgatcaccagcagccagatttggaagtggtagaagaattcaggagtattggaagtcaggtggatgaccagacaattg tagaagaaagtaaccttaataacatagtggtagaaacaattgtcatgcagtgtgaggacgggtcaggtaaagaaatcaaa tgcgttgtaaagagagatgaggatgatgaagttaaagtggaggtaacgggaactagaaaagatttgtctacctcaaatag tgattctgttattaaaatagaggacggccctgaaggtgatggtgatagtaaaaatcctattgcgatatccactgtgcaag atatcaaggtagaaccattggacataaaagtggaaccaaagcttgaacagagtgatacaggggaaggtgaagaggaaggt gcggggtttcaggtagtggctgaatggactcaaacagccgaggcagagggaggaaagattaaagaggagactgatattgt taaagaagatgaagacgatgataaggacaaagataccaaatgcccgacacctggttgtgatggctctggtcatgttacag gcctctattctcatcacagaaggcagattttgatatatattctggttatatttcagataccaaatgcccgacacctggtt gtgatggctctggtcatgttacaggcctctattctcatcacagaagttattgctctgtatgaaaatttagcaaggtgtcc tacacctgggtgtacaggaaaaggccatgtgaatagtaacagaagctcacatagaagtttgtcgggatgtcctatagctg ctatgggtaaacttgtctctgtcacccaacaaaacgccaagaagtcaggtctccacctagttttgctaccaaaagatgat gacccatccaaggcggtgctagccgcatgtaatgagaaagaactgatccgattggctgcccagaagtgtaaagcttctga gactgctgtgacagcgacagtagctccgcccaccaccatcaccaaggagacagaccgtgtattacgacctatgatcctta ccaaacagttagagcttggtcagaacatgacgtcagtggtctctgctcagactccaaggaataatctagccaaggaactt gagaagtataatcgccctgaagtatcccaggcttcatccacttcactctcgacatcggccatcaaagtggagacaccaag cgcggcatcaacactgaaaccaccgcccccactaacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnggcacctgttcctattaaagttccaaagcgagaatccatgaaacccagtatcct gcgcagacctgcgaaaaaacctgctcctgaagtaaagactccttctgaagcagaggaccaagccgcaagcattactgccc tgagcagcttactgaaaagaacacctaaatcaatcgtagtgccgaggtcagtaaattatactcgatctgtaactaatgta actataccaaatccttttatgtcaatggtcactcggccagcgcagcctgaatgccaaggaagaattcatgtgaaaaagaa ggacaagaagtcatctccccaaacaatgtatgtttctccgtctggtcaggaggtacacgtaccaccaggatcgggggact taagtgctgagagttccaggtgttcaagtccagacacatatcccccaagttcaccctgttctcaagtggaagggaaaaat acttcccaatgtccttacccagggtgtgatgggtcgggtcatgtgaccggtaattatacctctcacagaagcttatctgg ctgtccattggctgacagagctactgtacaagccaatcaggttgaaatgaaatgccccacaattggatgtgatggatctg gtcatgtgactgggaattatgcctctcatcgaagtttatctggatgccctcgagcagcaaaacttaaacgtacttcggga aaggatggggaaaagatagacgaggaaccacttcgctgtcctattccgggatgtgatgggacaggtcatgtgacaggaaa atatttgtcccatcgaagtgcctctggatgtccccttgccaacaaacacaagttacaacgacaattattggccaacttgg atggccaagacccagaacttgccaaatcactcaaaatggatggtgtggtgtgtcctacaccaggttgtgatggttccggc cattctaacggaagttttctgtcccatcgaagcctctcaggctgtccgcgtgccacgtctgcgatgaaaaaagccaagct aagtcctgctgaactcactaatatacaccaaaaactccaaaatggtattgaagatgaaataatgagtagaaatacctatt tccacaaatattataagtag |
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| Transcript ID | pfu_aug2.0_213.1_10448.t2 |
| Definition | - |
>pfu_aug2.0_213.1_10448.t2 atggtcgttggcagtggaggagaaattacatcagaaaatgttgaggtaaaaaatgaagaatacctggacatggaaggaga ggagaatgtgtctgtgggaaaagattgtcttatcataacctccgatgatgggaaaagtgaaatattgaaactagacgtcc ccattctacagtacgagaatgcggaggaggctggtataggaggagggccgctgatggtcggtggaggagttcttacaaag gaggacatggaacaagatattgacatgagttcacccaagaaagcaacaatagaaacaatgtgtacatttcctggatatac tggggaagagcaaatcacaggggaatttatacagcatggctcctcgcaaaactgtccccaaaatgctgccaagaaaagga agctagatgatgatgaagatgacgagaaagaaagtgtgcaaaaatgtctgagattgaatgacggtgaatttgtgacagat gacacggaaataaaagcagaggatgtgatagacatatccctgatatctgatcaccagcagccagatttggaagtggtaga agaattcaggagtattggaagtcaggtggatgaccagacaattgtagaagaaagtaaccttaataacatagtggtagaaa caattgtcatgcagtgtgaggacgggtcaggtaaagaaatcaaatgcgttgtaaagagagatgaggatgatgaagttaaa gtggaggtaacgggaactagaaaagatttgtctacctcaaatagtgattctgttattaaaatagaggacggccctgaagg tgatggtgatagtaaaaatcctattgcgatatccactgtgcaagatatcaaggtagaaccattggacataaaagtggaac caaagcttgaacagagtgatacaggggaaggtgaagaggaaggtgcggggtttcaggtagtggctgaatggactcaaaca gccgaggcagagggaggaaagattaaagaggagactgatattgttaaagaagatgaagacgatgataaggacaaagatac caaatgcccgacacctggttgtgatggctctggtcatgttacaggcctctattctcatcacagaaggcagattttgatat atattctggttatatttcagataccaaatgcccgacacctggttgtgatggctctggtcatgttacaggcctctattctc atcacagaagttattgctctgtatgaaaatttagcaaggtgtcctacacctgggtgtacaggaaaaggccatgtgaatag taacagaagctcacatagaagtttgtcgggatgtcctatagctgctatgggtaaacttgtctctgtcacccaacaaaacg ccaagaagtcaggtctccacctagttttgctaccaaaagatgatgacccatccaaggcggtgctagccgcatgtaatgag aaagaactgatccgattggctgcccagaagtgtaaagcttctgagactgctgtgacagcgacagtagctccgcccaccac catcaccaaggagacagaccgtgtattacgacctatgatccttaccaaacagttagagcttggtcagaacatgacgtcag tggtctctgctcagactccaaggaataatctagccaaggaacttgagaagtataatcgccctgaagtatcccaggcttca tccacttcactctcgacatcggccatcaaagtggagacaccaagcgcggcatcaacactgaaaccaccgcccccactaac acannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnggcacctgtt cctattaaagttccaaagcgagaatccatgaaacccagtatcctgcgcagacctgcgaaaaaacctgctcctgaagtaaa gactccttctgaagcagaggaccaagccgcaagcattactgccctgagcagcttactgaaaagaacacctaaatcaatcg tagtgccgaggtcagtaaattatactcgatctgtaactaatgtaactataccaaatccttttatgtcaatggtcactcgg ccagcgcagcctgaatgccaaggaagaattcatgtgaaaaagaaggacaagaagtcatctccccaaacaatgtatgtttc tccgtctggtcaggaggtacacgtaccaccaggatcgggggacttaagtgctgagagttccaggtgttcaagtccagaca catatcccccaagttcaccctgttctcaagtggaagggaaaaatacttcccaatgtccttacccagggtgtgatgggtcg ggtcatgtgaccggtaattatacctctcacagaagcttatctggctgtccattggctgacagagctactgtacaagccaa tcaggttgaaatgaaatgccccacaattggatgtgatggatctggtcatgtgactgggaattatgcctctcatcgaagtt tatctggatgccctcgagcagcaaaacttaaacgtacttcgggaaaggatggggaaaagatagacgaggaaccacttcgc tgtcctattccgggatgtgatgggacaggtcatgtgacaggaaaatatttgtcccatcgaagtgcctctggatgtcccct tgccaacaaacacaagttacaacgacaattattggccaacttggatggccaagacccagaacttgccaaatcactcaaaa tggatggtgtggtgtgtcctacaccaggttgtgatggttccggccattctaacggaagttttctgtcccatcgaagcctc tcaggctgtccgcgtgccacgtctgcgatgaaaaaagccaagctaagtcctgctgaactcactaatatacaccaaaaact ccaaaatggtattgaagatgaaataatgagtagaaatacctatttccacaaatattataagtag |
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| Transcript ID | pfu_aug2.0_213.1_10448.t3 |
| Definition | - |
>pfu_aug2.0_213.1_10448.t3 atgacaaccctacattttggagatgatggaaagataatggtcgttggcagtggaggagaaattacatcagaaaatgttga ggtaaaaaatgaagaatacctggacatggaaggagaggagaatgtgtctgtgggaaaagattgtcttatcataacctccg atgatgggaaaagtgaaatattgaaactagacgtccccattctacagtacgagaatgcggaggaggctggtataggagga gggccgctgatggtcggtggaggagttcttacaaaggaggacatggaacaagatattgacatgagttcacccaagaaagc aacaatagaaacaatgtgtacatttcctggatatactggggaagagcaaatcacaggggaatttatacagcatggctcct cgcaaaactgtccccaaaatgctgccaagaaaaggaagctagatgatgatgaagatgacgagaaagaaagtgtgcaaaaa tgtctgagattgaatgacggtgaatttgtgacagatgacacggaaataaaagcagaggatgtgatagacatatccctgat atctgatcaccagcagccagatttggaagtggtagaagaattcaggagtattggaagtcaggtggatgaccagacaattg tagaagaaagtaaccttaataacatagtggtagaaacaattgtcatgcagtgtgaggacgggtcaggtaaagaaatcaaa tgcgttgtaaagagagatgaggatgatgaagttaaagtggaggtaacgggaactagaaaagatttgtctacctcaaatag tgattctgttattaaaatagaggacggccctgaaggtgatggtgatagtaaaaatcctattgcgatatccactgtgcaag atatcaaggtagaaccattggacataaaagtggaaccaaagcttgaacagagtgatacaggggaaggtgaagaggaaggt gcggggtttcaggtagtggctgaatggactcaaacagccgaggcagagggaggaaagattaaagaggagactgatattgt taaagaagatgaagacgatgataaggacaaagataccaaatgcccgacacctggttgtgatggctctggtcatgttacag gcctctattctcatcacagaaggcagattttgatatatattctggttatatttcagataccaaatgcccgacacctggtt gtgatggctctggtcatgttacaggcctctattctcatcacagaagttattgctctgtatgaaaatttagcaaggtgtcc tacacctgggtgtacaggaaaaggccatgtgaatagtaacagaagctcacatagaagtttgtcgggatgtcctatagctg ctatgggtaaacttgtctctgtcacccaacaaaacgccaagaagtcaggtctccacctagttttgctaccaaaagatgat gacccatccaaggcggtgctagccgcatgtaatgagaaagaactgatccgattggctgcccagaagtgtaaagcttctga gactgctgtgacagcgacagtagctccgcccaccaccatcaccaaggagacagaccgtgtattacgacctatgatcctta ccaaacagttagagcttggtcagaacatgacgtcagtggtctctgctcagactccaaggaataatctagccaaggaactt gagaagtataatcgccctgaagtatcccaggcttcatccacttcactctcgacatcggccatcaaagtggagacaccaag cgcggcatcaacactgaaaccaccgcccccactaacacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnggcacctgttcctattaaagttccaaagcgagaatccatgaaacccagtatcct gcgcagacctgcgaaaaaacctgctcctgaagtaaagactccttctgaagcagaggaccaagccgcaagcattactgccc tgagcagcttactgaaaagaacacctaaatcaatcgtagtgccgaggtcagtaaattatactcgatctgtaactaatgta actataccaaatccttttatgtcaatggtcactcggccagcgcagcctgaatgccaaggaagaattcatgtgaaaaagaa ggacaagaagtcatctccccaaacaatgtatgtttctccgtctggtcaggaggtacacgtaccaccaggatcgggggact taagtgctgagagttccaggtgttcaagtccagacacatatcccccaagttcaccctgttctcaagtggaagggaaaaat acttcccaatgtccttacccagggtgtgatgggtcgggtcatgtgaccggtaattatacctctcacagaagcttatctgg ctgtccattggctgacagagctactgtacaagccaatcaggttgaaatgaaatgccccacaattggatgtgatggatctg gtcatgtgactgggaattatgcctctcatcgaagtttatctggatgccctcgagcagcaaaacttaaacgtacttcggga aaggatggggaaaagatagacgaggaaccacttcgtgcctctggatgtccccttgccaacaaacacaagttacaacgaca attattggccaacttggatggccaagacccagaacttgccaaatcactcaaaatggatggtgtggtgtgtcctacaccag gttgtgatggttccggccattctaacggaagttttctgtcccatcgaagcctctcaggctgtccgcgtgccacgtctgcg atgaaaaaagccaagctaagtcctgctgaactcactaatatacaccaaaaactccaaaatggtattgtaggattttcata g |
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Protein
| Protein ID | pfu_aug2.0_213.1_10448.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_213.1_10448.t1 MTTLHFGDDGKIMVVGSGGEITSENVEVKNEEYLDMEGEENVSVGKDCLIITSDDGKSEILKLDVPILQYENAEEAGIGG GPLMVGGGVLTKEDMEQDIDMSSPKKATIETMCTFPGYTGEEQITGEFIQHGSSQNCPQNAAKKRKLDDDEDDEKESVQK CLRLNDGEFVTDDTEIKAEDVIDISLISDHQQPDLEVVEEFRSIGSQVDDQTIVEESNLNNIVVETIVMQCEDGSGKEIK CVVKRDEDDEVKVEVTGTRKDLSTSNSDSVIKIEDGPEGDGDSKNPIAISTVQDIKVEPLDIKVEPKLEQSDTGEGEEEG AGFQVVAEWTQTAEAEGGKIKEETDIVKEDEDDDKDKDTKCPTPGCDGSGHVTGLYSHHRRQILIYILVIFQIPNARHLV VMALVMLQASILITEVIALYENLARCPTPGCTGKGHVNSNRSSHRSLSGCPIAAMGKLVSVTQQNAKKSGLHLVLLPKDD DPSKAVLAACNEKELIRLAAQKCKASETAVTATVAPPTTITKETDRVLRPMILTKQLELGQNMTSVVSAQTPRNNLAKEL EKYNRPEVSQASSTSLSTSAIKVETPSAASTLKPPPPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXAPVPIKVPKRESMKPSILRRPAKKPAPEVKTPSEAEDQAASITALSSLLKRTPKSIVVPRSVNYTRSVTNV TIPNPFMSMVTRPAQPECQGRIHVKKKDKKSSPQTMYVSPSGQEVHVPPGSGDLSAESSRCSSPDTYPPSSPCSQVEGKN TSQCPYPGCDGSGHVTGNYTSHRSLSGCPLADRATVQANQVEMKCPTIGCDGSGHVTGNYASHRSLSGCPRAAKLKRTSG KDGEKIDEEPLRCPIPGCDGTGHVTGKYLSHRSASGCPLANKHKLQRQLLANLDGQDPELAKSLKMDGVVCPTPGCDGSG HSNGSFLSHRSLSGCPRATSAMKKAKLSPAELTNIHQKLQNGIEDEIMSRNTYFHKYYK |
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| Protein ID | pfu_aug2.0_213.1_10448.t2 |
| Definition | - |
>pfu_aug2.0_213.1_10448.t2 MVVGSGGEITSENVEVKNEEYLDMEGEENVSVGKDCLIITSDDGKSEILKLDVPILQYENAEEAGIGGGPLMVGGGVLTK EDMEQDIDMSSPKKATIETMCTFPGYTGEEQITGEFIQHGSSQNCPQNAAKKRKLDDDEDDEKESVQKCLRLNDGEFVTD DTEIKAEDVIDISLISDHQQPDLEVVEEFRSIGSQVDDQTIVEESNLNNIVVETIVMQCEDGSGKEIKCVVKRDEDDEVK VEVTGTRKDLSTSNSDSVIKIEDGPEGDGDSKNPIAISTVQDIKVEPLDIKVEPKLEQSDTGEGEEEGAGFQVVAEWTQT AEAEGGKIKEETDIVKEDEDDDKDKDTKCPTPGCDGSGHVTGLYSHHRRQILIYILVIFQIPNARHLVVMALVMLQASIL ITEVIALYENLARCPTPGCTGKGHVNSNRSSHRSLSGCPIAAMGKLVSVTQQNAKKSGLHLVLLPKDDDPSKAVLAACNE KELIRLAAQKCKASETAVTATVAPPTTITKETDRVLRPMILTKQLELGQNMTSVVSAQTPRNNLAKELEKYNRPEVSQAS STSLSTSAIKVETPSAASTLKPPPPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPV PIKVPKRESMKPSILRRPAKKPAPEVKTPSEAEDQAASITALSSLLKRTPKSIVVPRSVNYTRSVTNVTIPNPFMSMVTR PAQPECQGRIHVKKKDKKSSPQTMYVSPSGQEVHVPPGSGDLSAESSRCSSPDTYPPSSPCSQVEGKNTSQCPYPGCDGS GHVTGNYTSHRSLSGCPLADRATVQANQVEMKCPTIGCDGSGHVTGNYASHRSLSGCPRAAKLKRTSGKDGEKIDEEPLR CPIPGCDGTGHVTGKYLSHRSASGCPLANKHKLQRQLLANLDGQDPELAKSLKMDGVVCPTPGCDGSGHSNGSFLSHRSL SGCPRATSAMKKAKLSPAELTNIHQKLQNGIEDEIMSRNTYFHKYYK |
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| Protein ID | pfu_aug2.0_213.1_10448.t3 |
| Definition | - |
>pfu_aug2.0_213.1_10448.t3 MTTLHFGDDGKIMVVGSGGEITSENVEVKNEEYLDMEGEENVSVGKDCLIITSDDGKSEILKLDVPILQYENAEEAGIGG GPLMVGGGVLTKEDMEQDIDMSSPKKATIETMCTFPGYTGEEQITGEFIQHGSSQNCPQNAAKKRKLDDDEDDEKESVQK CLRLNDGEFVTDDTEIKAEDVIDISLISDHQQPDLEVVEEFRSIGSQVDDQTIVEESNLNNIVVETIVMQCEDGSGKEIK CVVKRDEDDEVKVEVTGTRKDLSTSNSDSVIKIEDGPEGDGDSKNPIAISTVQDIKVEPLDIKVEPKLEQSDTGEGEEEG AGFQVVAEWTQTAEAEGGKIKEETDIVKEDEDDDKDKDTKCPTPGCDGSGHVTGLYSHHRRQILIYILVIFQIPNARHLV VMALVMLQASILITEVIALYENLARCPTPGCTGKGHVNSNRSSHRSLSGCPIAAMGKLVSVTQQNAKKSGLHLVLLPKDD DPSKAVLAACNEKELIRLAAQKCKASETAVTATVAPPTTITKETDRVLRPMILTKQLELGQNMTSVVSAQTPRNNLAKEL EKYNRPEVSQASSTSLSTSAIKVETPSAASTLKPPPPLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXAPVPIKVPKRESMKPSILRRPAKKPAPEVKTPSEAEDQAASITALSSLLKRTPKSIVVPRSVNYTRSVTNV TIPNPFMSMVTRPAQPECQGRIHVKKKDKKSSPQTMYVSPSGQEVHVPPGSGDLSAESSRCSSPDTYPPSSPCSQVEGKN TSQCPYPGCDGSGHVTGNYTSHRSLSGCPLADRATVQANQVEMKCPTIGCDGSGHVTGNYASHRSLSGCPRAAKLKRTSG KDGEKIDEEPLRASGCPLANKHKLQRQLLANLDGQDPELAKSLKMDGVVCPTPGCDGSGHSNGSFLSHRSLSGCPRATSA MKKAKLSPAELTNIHQKLQNGIVGFS |
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