Gene
| Gene Model ID | pfu_aug2.0_213.1_10449 |
|---|---|
| Locus | scaffold213.1 : 327467 ... 336531 : - |
| To GenomeBrowser | scaffold213.1:327467..336531 |
| Genes list of scaffold | scaffold213.1 |
| Synonym | pfu_aug1.0_5177.1_45128 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_213.1_10449.t1 | 8 | 1 | WD40 | 58 | 87 | 3.4e-22 | 77.4 | 0.31 | 2300.0 | -1.3 |
| pfu_aug2.0_213.1_10449.t1 | 8 | 2 | WD40 | 135 | 159 | 3.4e-22 | 77.4 | 0.0068 | 50.0 | 3.9 |
| pfu_aug2.0_213.1_10449.t1 | 8 | 3 | WD40 | 177 | 209 | 3.4e-22 | 77.4 | 0.0045 | 33.0 | 4.5 |
| pfu_aug2.0_213.1_10449.t1 | 8 | 4 | WD40 | 226 | 238 | 3.4e-22 | 77.4 | 0.042 | 310.0 | 1.4 |
| pfu_aug2.0_213.1_10449.t1 | 8 | 5 | WD40 | 256 | 288 | 3.4e-22 | 77.4 | 0.0045 | 33.0 | 4.5 |
| pfu_aug2.0_213.1_10449.t1 | 8 | 6 | WD40 | 297 | 332 | 3.4e-22 | 77.4 | 4.4e-11 | 3.3e-07 | 29.9 |
| pfu_aug2.0_213.1_10449.t1 | 8 | 7 | WD40 | 338 | 372 | 3.4e-22 | 77.4 | 1.3e-08 | 9.5e-05 | 22.1 |
| pfu_aug2.0_213.1_10449.t1 | 8 | 8 | WD40 | 414 | 446 | 3.4e-22 | 77.4 | 1.4e-07 | 0.0011 | 18.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_213.1_10449.t1 | gi|441660782|ref|XP_003281707.2| | 0.0 | |
| pfu_aug2.0_213.1_10449.t1 | gi|676463616|ref|XP_009056653.1| | hypothetical protein LOTGIDRAFT_206565 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_213.1_10449.t1 | gi|635082930|ref|XP_007969807.1| | PREDICTED: protein TSSC1 isoform X1 [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_213.1_10449.t1 | gi|675691869|ref|XP_008957768.1| | PREDICTED: protein TSSC1 isoform X1 [Pan paniscus] | 0.0 |
| pfu_aug2.0_213.1_10449.t1 | gi|524916232|ref|XP_005112897.1| | PREDICTED: protein TSSC1-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_213.1_10449.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_213.1_10449.t1 atggaagatgaagcacccgttatttatggcctagaattccaggctcgggccttggcagcacagacggcagaaactgaaca aatcagattcctggtcggtactcagtcactaagggcagataatcaagtacatcatattgactttgatgatgagaacaata tcatcaataagaatgtgtttctgcacagagaaggtgaaatctgggatatcagtgcttctacattggacaaagatctgctc acaacatgttataacaaaactacagaatctaaggcagaaatgtgtgcagctgtatggaaaataccagacgattttgatgg aaatcagcatgatgattctgcttcccataatgccttgcagctagtgtgtcaccttgacaacacagattatggtgatatga aatgtgtattatggcatccatcaggggagagcagtaaattgattggcctagctgataatcacatactactttgggatttc gatgtggcatcatcttcggccaaactaaccagttccactggcttagaaagtaagggtcactctaaattgacatgtggtcg atggaatcctcatcataactgcacgcaaattgtaacagcaaatgatacagctatcaggggatgggatatcagatcaatgc atgtattatggcatccatcaggggagagcagtaaattgattggcctagctgataatcacatactactatgggatttcgat gtggcatcatcttcggcgaaactaaccagttcaactggcttagaaagtaagggtcactctaaattgacatgtggtcgatg gaatcctcatcataactgcacgcaaattgtaacagcaaatgatacagctatcaggggatgggatatcagatcaatgcaac aggtatatacaatagataatgctcatggccagttggtgagagatttggattttaatcccaataagcagtattacttggtc agttgtggtgatgactgtaaaattaaattctgggatacaagaaacacaaaggaaaatctcaaagttctctcagaacattc tcattgggtgtggtctattaagtataaccatttccatgatcagctgatcctatcctccagtagtgacagtcgggtcgtcc ttaataacattgtgtcattatcatctgaaccatacggacatctggtagacaatgaagatgatagtgatgatgaaagagag gatatagaaagaaccactgagcctccaaaagacggagtgatagctacttatgaggaacatgaagatagtgtctatgctgt agactggtcatcggcagatccatgggtgtttgcttcattaagttatgatggaagacttgttataaatagagtaccaaggg cagaaaaatacaaaattctattgtag |
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Protein
| Protein ID | pfu_aug2.0_213.1_10449.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_213.1_10449.t1 MEDEAPVIYGLEFQARALAAQTAETEQIRFLVGTQSLRADNQVHHIDFDDENNIINKNVFLHREGEIWDISASTLDKDLL TTCYNKTTESKAEMCAAVWKIPDDFDGNQHDDSASHNALQLVCHLDNTDYGDMKCVLWHPSGESSKLIGLADNHILLWDF DVASSSAKLTSSTGLESKGHSKLTCGRWNPHHNCTQIVTANDTAIRGWDIRSMHVLWHPSGESSKLIGLADNHILLWDFD VASSSAKLTSSTGLESKGHSKLTCGRWNPHHNCTQIVTANDTAIRGWDIRSMQQVYTIDNAHGQLVRDLDFNPNKQYYLV SCGDDCKIKFWDTRNTKENLKVLSEHSHWVWSIKYNHFHDQLILSSSSDSRVVLNNIVSLSSEPYGHLVDNEDDSDDERE DIERTTEPPKDGVIATYEEHEDSVYAVDWSSADPWVFASLSYDGRLVINRVPRAEKYKILL |
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