Gene
| Gene Model ID | pfu_aug2.0_213.1_10450 |
|---|---|
| Locus | scaffold213.1 : 345762 ... 363991 : + |
| To GenomeBrowser | scaffold213.1:345762..363991 |
| Genes list of scaffold | scaffold213.1 |
| Synonym | pfu_aug1.0_7025.1_09473 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_213.1_10450.t1 | 3 | 1 | TPR_19 | 510 | 552 | 5.9e-08 | 32.9 | 1.2 | 1800.0 | -0.7 |
| pfu_aug2.0_213.1_10450.t1 | 4 | 1 | TPR_1 | 592 | 608 | 1.1e-07 | 31.1 | 4.8 | 7100.0 | -3.1 |
| pfu_aug2.0_213.1_10450.t1 | 2 | 1 | TPR_11 | 671 | 697 | 1.4e-10 | 40.6 | 0.00077 | 1.1 | 8.8 |
| pfu_aug2.0_213.1_10450.t1 | 3 | 1 | TPR_2 | 672 | 697 | 4.0e-06 | 26.3 | 1.1e-05 | 0.016 | 15.0 |
| pfu_aug2.0_213.1_10450.t1 | 3 | 2 | TPR_19 | 673 | 696 | 5.9e-08 | 32.9 | 0.00094 | 1.4 | 9.3 |
| pfu_aug2.0_213.1_10450.t1 | 4 | 2 | TPR_1 | 673 | 697 | 1.1e-07 | 31.1 | 2.3e-05 | 0.035 | 13.7 |
| pfu_aug2.0_213.1_10450.t1 | 2 | 2 | TPR_11 | 713 | 775 | 1.4e-10 | 40.6 | 5.0e-10 | 7.4e-07 | 28.7 |
| pfu_aug2.0_213.1_10450.t1 | 4 | 3 | TPR_1 | 715 | 743 | 1.1e-07 | 31.1 | 0.00037 | 0.55 | 9.9 |
| pfu_aug2.0_213.1_10450.t1 | 3 | 2 | TPR_2 | 715 | 743 | 4.0e-06 | 26.3 | 0.0026 | 3.8 | 7.6 |
| pfu_aug2.0_213.1_10450.t1 | 3 | 3 | TPR_19 | 723 | 779 | 5.9e-08 | 32.9 | 6.8e-07 | 0.001 | 19.3 |
| pfu_aug2.0_213.1_10450.t1 | 4 | 4 | TPR_1 | 748 | 766 | 1.1e-07 | 31.1 | 0.054 | 80.0 | 3.0 |
| pfu_aug2.0_213.1_10450.t1 | 3 | 3 | TPR_2 | 748 | 765 | 4.0e-06 | 26.3 | 2.9 | 4300.0 | -1.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_213.1_10450.t1 | gi|676422044|ref|XP_009043911.1| | hypothetical protein LOTGIDRAFT_102990, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_213.1_10450.t1 | gi|585641960|ref|XP_006811107.1| | PREDICTED: trafficking protein particle complex subunit 12-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_213.1_10450.t1 | gi|557012050|ref|XP_006006603.1| | PREDICTED: trafficking protein particle complex subunit 12 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_213.1_10450.t1 | gi|573876365|ref|XP_006626461.1| | PREDICTED: trafficking protein particle complex subunit 12-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_213.1_10450.t1 | gi|632972971|ref|XP_007902921.1| | PREDICTED: trafficking protein particle complex subunit 12 [Callorhinchus milii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_213.1_10450.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_213.1_10450.t1 atgactgatcctaactcaagtagcttccttgaagatgagttccttgatgacagtcaatgccagcttcagcctcccggtgg ggaccacagcaccctggtccactcccctacaacagacaccctggactctgtggccctgggaccaagtgaggatctgagtg gtctagaggatgtcctgtcagaggaggtccatacagagcacctccagtctcctgacgctgggatagaaatcatggtagat accaaccaggacgattcagggtcaagggttggtgaggatggtcaaagcattagcctgtctgacgggatgtctggacaagg tcaatcagaaactattgatttgtttgggaagggaaccaaaccaaccgaaattgagttagccacagaagctcaaagtagga ataccaaggaagaggtcagcatcagtagctactttaacactggaccagatcaagatgatccttttggttctgttgtcaag agccctagcattccctctgatatgcagagtaaagttacaaaggagattaaggaggatgtgacgtacattcatcatgagcc cctggagtcaaggatatctcaggaggagccagagactgtggatttctcagtacccgagaacgaaggagattctaatgtaa tggaggcctccatgcacatcattgatgataaagaggactttgaatcattcactgcagaaagtggacctgcagacatggat gacctagggcttggagtttcaccttcaaacaaattcttgacagaaaggatgaacaaaatgcacataaatgataattctca aggtgaaaacactgatatatctaagtcagattatagtcgacaactgtcttcttccagcacacattccttaggaggtttcc aaagctctgcacagaatatgaccccacccattgccccctcccccatacaccaaccattccaaggagctccattctctgct tcccagttctctcccttctctacaccaactcaccaaccagtaatttctcacgagaccaagcaccaagagccaagtacagg tgtacctactgaaactgtgaatgaggaaaaatcagtagctttgccaactgttcctgaggtgagcagtcaaacacctttca actccctgcctctggagagtggagaagatcctttcactgccagtcttaacatgagtgattctgatcgacagtttgatgct tggataccgtcagacaacacccggcaactgcttgtaaccatggcaaccagtattcctggaacatttattcctactataga acagctcagctgcccaggaataattgtagatgaaccacagggtgatcctgtgcgagacttggtattcagatatatgggag aacaagaggccataaagcgtaagattctcacagtggatactgtaacacaagatgtagaaggactcaagaaactcattgga ggtggatgttatagatcagcagtggacctaacgtgtcaacttttgtctgcaggaggacaggggtcagggaaagtaggtca ggttacccaacacacacctcatacattacagctatggttcaccagactagttttgcttatgaagctacggctgtacagcg tggcagagtctgagttacaggcatttcagaacttagacacacctgatttgtactatgagttttatccccatatttaccct ggtaggaaaggatcaatggttccgtttggtatgagagtgctgcatgcagagctaccgcactatatgggaagatctacaga agcattggataggctgtattatatacttgctgttgtacaaaagacccttagcaacttggaaaaggggtattcagaggatg gtagtgcagttgaaatatctgatgaaagtagaaaagtgtccactggaatttggcaggaaagagagagaagagttctttat ataattggaaatacactactagctataaggctcgccgggacgaaaaagtccggagagctgatgccataccctcggcgtcg tcattgtcgtcctgcccttctcagtggtatgggcaggttctatctacagatgggaaatgtagacaaagcaaaggattgtt tccaacatgcagagatactatcagacagcagcaataaaagtattctgtgtagaaactttgtcaacaaagggttagagtcg atgtgtatgaacaacttttcagaagcctaccagaattttaaatcagcagttgatgcagacccaacaaacacatctgctgt aaacaacatggctgcatgttcgctttacttgggaagattaatggatgccctaaagacattagagataatggttcatgacg acccacaaagaaatctacatgagggagttttgtttaacctatgtacactgtacgagctagaatcctcacgagctttacac aaaaaacaagcgttgttggaccttgtcagcagatataaaggagatggctttcctgtagcatgtcttaagatggcctga |
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Protein
| Protein ID | pfu_aug2.0_213.1_10450.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_213.1_10450.t1 MTDPNSSSFLEDEFLDDSQCQLQPPGGDHSTLVHSPTTDTLDSVALGPSEDLSGLEDVLSEEVHTEHLQSPDAGIEIMVD TNQDDSGSRVGEDGQSISLSDGMSGQGQSETIDLFGKGTKPTEIELATEAQSRNTKEEVSISSYFNTGPDQDDPFGSVVK SPSIPSDMQSKVTKEIKEDVTYIHHEPLESRISQEEPETVDFSVPENEGDSNVMEASMHIIDDKEDFESFTAESGPADMD DLGLGVSPSNKFLTERMNKMHINDNSQGENTDISKSDYSRQLSSSSTHSLGGFQSSAQNMTPPIAPSPIHQPFQGAPFSA SQFSPFSTPTHQPVISHETKHQEPSTGVPTETVNEEKSVALPTVPEVSSQTPFNSLPLESGEDPFTASLNMSDSDRQFDA WIPSDNTRQLLVTMATSIPGTFIPTIEQLSCPGIIVDEPQGDPVRDLVFRYMGEQEAIKRKILTVDTVTQDVEGLKKLIG GGCYRSAVDLTCQLLSAGGQGSGKVGQVTQHTPHTLQLWFTRLVLLMKLRLYSVAESELQAFQNLDTPDLYYEFYPHIYP GRKGSMVPFGMRVLHAELPHYMGRSTEALDRLYYILAVVQKTLSNLEKGYSEDGSAVEISDESRKVSTGIWQERERRVLY IIGNTLLAIRLAGTKKSGELMPYPRRRHCRPALLSGMGRFYLQMGNVDKAKDCFQHAEILSDSSNKSILCRNFVNKGLES MCMNNFSEAYQNFKSAVDADPTNTSAVNNMAACSLYLGRLMDALKTLEIMVHDDPQRNLHEGVLFNLCTLYELESSRALH KKQALLDLVSRYKGDGFPVACLKMA |
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