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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_214.1_13802
Locus scaffold214.1 : 77114 ... 92835 : -
To GenomeBrowser scaffold214.1:77114..92835
Genes list of scaffold scaffold214.1
Synonym pfu_aug1.0_33972.1_19513

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_214.1_13802.t1 2 1 Carb_anhydrase 33 108 7.9e-29 100.3 9.2e-15 6.8e-11 41.6
pfu_aug2.0_214.1_13802.t1 2 1 Collagen 136 186 9.9e-15 53.8 7.6e-12 5.6e-08 32.2
pfu_aug2.0_214.1_13802.t1 2 2 Collagen 161 219 9.9e-15 53.8 8.6e-13 6.3e-09 35.2
pfu_aug2.0_214.1_13802.t1 2 2 Carb_anhydrase 259 333 7.9e-29 100.3 6.5e-20 4.8e-16 58.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_214.1_13802.t1 gi|82539404|ref|XP_724092.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL] 1.0e-19
pfu_aug2.0_214.1_13802.t1 gi|505856698|ref|XP_004621752.1| 1.0e-09
pfu_aug2.0_214.1_13802.t1 gi|311977572|ref|YP_003986692.1| collagen-like protein 2 [Acanthamoeba polyphaga mimivirus] 9.0e-09

Transcript
Transcript IDpfu_aug2.0_214.1_13802.t1
Definition-
>pfu_aug2.0_214.1_13802.t1
atggagaaattaaaaacagaagtgaccaatcatcagaaccgagctccagagttcgagccagaggatggggaaaatctgta
cgtgaagctaaataacctagtggacggtcattataaattccataatcttcacgttcataatggtagaaccagacgtaagg
gatcagaacacagtgttaacggtcgtttcacacctatggaggctcatttggttttccatcatgatgaacaaacacacttt
gaacctacacgcactaagctgggaggagcattccctggtcataacgattttgtcgtcgttggagtttttcttgaggtcgg
agatgacggctttggcgacgaaccggatgacgaagaatgtaaacacatcttaaagggacatcaccctgataataacgaga
acggcaatggagacaacggcaataacggctacaatggggacaacggtaacaatggtgacaacggcaataacggctacaat
ggggacaacggtaacaatggtgtcaacggcaataacggctacaatggggacaacggtaacaatggagacaacggcaataa
cggctacaatggggacaacggtaacaatggtgacaacggcaataacggtgaaaacggcaataacggtgaaaacggcaata
acggtgaaaatggtcacaaacacggatgtcgggtaaagaaagcaaagcatctcagtaggatcctggaatgtgcttataga
aacgataaggtcagagagttcaagaaagttggagaagaggaagggttagatgttcatctaacaccggagatggctttgcc
gccacttaagtacagacattactatacatacgagggatccctgaccactcccccttgtacagagtctgtcctctgggttg
ttcaaaaatgccatgtgcaggtgtcaagaagggttcttcatgcattacgaaatgttgaaggatataaagatggtaccaca
cttagaaagtatggaactagacgtccaacacaaaagaataaagttactgtgtacaaaagcttcaaatag

Protein
Protein IDpfu_aug2.0_214.1_13802.t1
Definition-
>pfu_aug2.0_214.1_13802.t1
MEKLKTEVTNHQNRAPEFEPEDGENLYVKLNNLVDGHYKFHNLHVHNGRTRRKGSEHSVNGRFTPMEAHLVFHHDEQTHF
EPTRTKLGGAFPGHNDFVVVGVFLEVGDDGFGDEPDDEECKHILKGHHPDNNENGNGDNGNNGYNGDNGNNGDNGNNGYN
GDNGNNGVNGNNGYNGDNGNNGDNGNNGYNGDNGNNGDNGNNGENGNNGENGNNGENGHKHGCRVKKAKHLSRILECAYR
NDKVREFKKVGEEEGLDVHLTPEMALPPLKYRHYYTYEGSLTTPPCTESVLWVVQKCHVQVSRRVLHALRNVEGYKDGTT
LRKYGTRRPTQKNKVTVYKSFK

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