Gene
| Gene Model ID | pfu_aug2.0_214.1_13808 |
|---|---|
| Locus | scaffold214.1 : 255614 ... 266574 : - |
| To GenomeBrowser | scaffold214.1:255614..266574 |
| Genes list of scaffold | scaffold214.1 |
| Synonym | pfu_aug1.0_16478.1_68980 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_214.1_13808.t1 | 1 | 1 | RRM_6 | 34 | 103 | 6.6e-16 | 58.0 | 5.5e-19 | 1.6e-15 | 56.7 |
| pfu_aug2.0_214.1_13808.t1 | 1 | 1 | RRM_1 | 35 | 103 | 4.1e-24 | 83.9 | 2.3e-27 | 6.7e-24 | 83.3 |
| pfu_aug2.0_214.1_13808.t1 | 1 | 1 | RRM_5 | 47 | 104 | 1.2e-08 | 34.6 | 7.3e-12 | 2.2e-08 | 33.8 |
| pfu_aug2.0_214.1_13808.t1 | 2 | 1 | CSTF2_hinge | 127 | 209 | 2.3e-32 | 110.8 | 7.9e-36 | 2.3e-32 | 110.8 |
| pfu_aug2.0_214.1_13808.t1 | 2 | 1 | CSTF_C | 150 | 156 | 1.5e-18 | 65.8 | 0.76 | 2200.0 | -2.1 |
| pfu_aug2.0_214.1_13808.t1 | 2 | 2 | CSTF_C | 386 | 427 | 1.5e-18 | 65.8 | 5.0e-22 | 1.5e-18 | 65.8 |
| pfu_aug2.0_214.1_13808.t1 | 2 | 2 | CSTF2_hinge | 410 | 430 | 2.3e-32 | 110.8 | 0.9 | 2700.0 | -1.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_214.1_13808.t1 | gi|573890421|ref|XP_006632972.1| | PREDICTED: cleavage stimulation factor subunit 2-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_214.1_13808.t1 | gi|524866370|ref|XP_005090007.1| | PREDICTED: cleavage stimulation factor subunit 2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_214.1_13808.t1 | gi|410927616|ref|XP_003977237.1| | PREDICTED: cleavage stimulation factor subunit 2 isoform X2 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_214.1_13808.t1 | gi|194332803|ref|NP_001123707.1| | cleavage stimulation factor subunit 2 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_214.1_13808.t1 | gi|556964656|ref|XP_005992050.1| | PREDICTED: cleavage stimulation factor subunit 2 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_214.1_13808.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_214.1_13808.t1 atggatatttcaaatgtcccaacagtttcaaggtctgagaataacatcataggtagagatggccgagtggataaggcttt cgactctcaagcagacgaccgggtcgggaacattccatatgaaacaacagaggagcagcttagagagatattttcagcag ccggtccggtcgtgagctttagattagtatatgacagagagacaggtaagcctaaaggttatggcttctgtgagtaccag gacgtggaaacagctcaaagcgcgatgcgtaatctcaacaactatgattttaatggccgtcccctgagagtgggtgtggc tgctggagaacagaatagggatgaaatgaaaggactacaacaggccttaggtggcccagtgatggagagcccgtatggtg atcctgtagaaccagagaaggcaccagaggccatatcaaaagccgtagctagtctccctcctgaacagatgtttgaactc atgaaacaaatgaagatgtgtattcagaataaccctacagaggccaggaacatgctgttacagaatccacagttagccta cgctctcttacaggctcaaattgtcatgaaaatcgtggatccacaagttgccatggcaatgttacacagagactctacac agatccctcctgccagctctgccacgcctacttcaggagtcagccagccaataccagcctctgcacctcagcctatgcct gccccaggtcaaatgggaatgccaggtccccctaggagtcaggcacctggagccccagtccctatggggccagggccaag aatgggagggccaggacctctaggtcttcaaccggacatgatggggccaagaggtccattgataggtccaggaccaggaa tgggaccccaggtgtcaggaccaggaccctctatgggaggaccacctatcagaccagacatgggtggaccagggcccaga ccagacatcagagacccgcgtatgatgggaggggatgccaggcctatgggtccaaggcctgggatgccaccacaaagcca agcagcagggatactccctctggcagggggtatgccaagactccctgctaacctactgggacctggtggtctgactggag gtttacccaatgttactagtggagcccaaatctcagcccaggatcaagaaaaggctgccttgatcatgcaagtgttacag ctaacggaccagcagatagccatgttaccaccagaccagagacagagtatacttatactcaaggaccaaatatcaaaaag tgcaactcagtga |
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Protein
| Protein ID | pfu_aug2.0_214.1_13808.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_214.1_13808.t1 MDISNVPTVSRSENNIIGRDGRVDKAFDSQADDRVGNIPYETTEEQLREIFSAAGPVVSFRLVYDRETGKPKGYGFCEYQ DVETAQSAMRNLNNYDFNGRPLRVGVAAGEQNRDEMKGLQQALGGPVMESPYGDPVEPEKAPEAISKAVASLPPEQMFEL MKQMKMCIQNNPTEARNMLLQNPQLAYALLQAQIVMKIVDPQVAMAMLHRDSTQIPPASSATPTSGVSQPIPASAPQPMP APGQMGMPGPPRSQAPGAPVPMGPGPRMGGPGPLGLQPDMMGPRGPLIGPGPGMGPQVSGPGPSMGGPPIRPDMGGPGPR PDIRDPRMMGGDARPMGPRPGMPPQSQAAGILPLAGGMPRLPANLLGPGGLTGGLPNVTSGAQISAQDQEKAALIMQVLQ LTDQQIAMLPPDQRQSILILKDQISKSATQ |
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