Gene
Gene Model ID | pfu_aug2.0_216.1_20433 |
---|---|
Locus | scaffold216.1 : 38083 ... 48525 : - |
To GenomeBrowser | scaffold216.1:38083..48525 |
Genes list of scaffold | scaffold216.1 |
Synonym | pfu_aug1.0_1528.1_51325 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_216.1_20433.t1 | 2 | 1 | RPE65 | 32 | 492 | 0.0 | 477.4 | 0.0 | 0.0 | 261.6 |
pfu_aug2.0_216.1_20433.t1 | 2 | 2 | RPE65 | 504 | 849 | 0.0 | 477.4 | 0.0 | 0.0 | 214.0 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_216.1_20433.t1 | gi|260807287|ref|XP_002598440.1| | hypothetical protein BRAFLDRAFT_83256 [Branchiostoma floridae] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_216.1_20433.t1 |
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Definition | - |
>pfu_aug2.0_216.1_20433.t1 atgcgtacgtcttgcgacgatcccggttttgatttactgattggaacttccatcacggacgaggtagagaaccatcctat aacgtttgacaagcctttgccgagttggctgaagggatcgctgattcgcaacggtcctgcaaggtatgaaatgggcaaca gaagattcctcaatcttttcgatgcattcggaaaacttaacaaatggacattccctggaaacggttcagcctttttctca gcaaaattcataggaagtcatttctataatgattctgtttccgaaaaagacatttcggactacatgatattcgacacaac ccttccaccgaagtcagaagagcaagttttgctagcgctagaaagaggaatggataatatgaatatcaacatttataatt ttaccgacggatgtgttgttcttagtgacacttggaagttatacaagattgactgcgaaaccatggcaactatttcagca ataaaaccatcaataagagatgatcaaattgggttgggttacataagcgtcatgtcatcggcacatccggtgccagaagt gggcacctcaaactactttatcttcctgacaagtatgagcttaattcctggaatcaaacacaaaatatcaatcttaagga tttcttcggttgacaaaagagaggttgttggtacctttgaagttgaagaggcgccctacatgcattctttctccgctact aaaaactacatcatcctctttgctcatccttatcatatcgatatcctgaaaatgatggaaacgggcacgcctaaggacag tatacaatggcatcctgatctaccaggaatgatatacgtcatggaaataaagactggaaaggtctttacattggaaaccg aaactttattttcgatgcaccatataaatgcttttgagaccaatgatagccaacctataataaatgtggatgttgcagca taccccgatgacagtctcgtggataattttgaagtttcaataatactcaataaaacaaaaagagatagtattcaatggca accaaaactagttagattcgcaatcaatttgtcgaacttggatgtaaaagtaatgggatttcccttcggaccaaataatg caatcgcatctcatctggaaattcctgcaataaacgaagcgtacaggtcgcgtccttattgttacgcttacgggttggtt ttccggagtgacaataaaacatttgccaattttacattcgttaagaaagacttgtgtgattctaaaggcgataaatcatg gtcaatacctgggcattaccccatggagggatggttcgtaccagacccttcaggaagcgctgaagatgacggtattatta tggtaccggttgtgaatggcgttgatagaaagagttatctcgctttcttagacgctcgaaatcttactttgatcaatagg tcaaacacgccatttattgtcccgtttcattttcatgatggatgtgctgtcctaggcgactactgggatttctacaaggt tgactgtaaaaccattgctactgtgacatcaataaaaccatcaacaaaagatgctaatattggattaggttacaccagtg ctatgtcaactgctcatccggtgccagaagtgggtacatcgaatcacttcacttttctgactagtatgagcatagttcca ggagtcaagcacaaaatatcaattttccggatttcatcggtggaaaaaagagatcttgtcggtcaatttcttgttgacaa agcgccttatatgcattctttctctgccaccaaaaattatattattctgttcgcccatccgtatcacgttgacatgctga agatgatgaagtcaggcatacctaaggacagtataacgtgggagcctgatttgcctggaattatctacgttatggaaata aaaacggggaaagtctatagatttgaaaccgaaacccttttttccatgcatcatataaatgcatatgagaagaacaacag caaatctttaatttatttggaccttgctgcatacccagatgtgagtatgataaacaattttgaaatttcgatacttctca ataaaaccgttcgagacagtatcaattggcagccccaaatagtacgatttgccatcgatttggcacaatcggaagtaaaa gtatcaagattcaattcaatagcatcccacttggaaatccccacaataaacgaagaatacaggtcccgccactattgtta tgtatacgggttagtttataaaagtgacaacaaaacatttgcagattttgcattcgcaaagaaagacttatgtgattcta gcggtgataaatcatggtcaatacctggacattaccccatggaaggatggttcgtaccagacccttctggaagagctgaa gatgacggcatagtaatggtaccagttgtgaatggtatagacagaaagagttatcttgctttcttggatgcgcgaaatct tactttgatcaataagtcaagcacaccatttattgttccgtttcattttcatggtcgatttttttccaacttgacgaact ga |
Protein
Protein ID | pfu_aug2.0_216.1_20433.t1 |
---|---|
Definition | - |
>pfu_aug2.0_216.1_20433.t1 MRTSCDDPGFDLLIGTSITDEVENHPITFDKPLPSWLKGSLIRNGPARYEMGNRRFLNLFDAFGKLNKWTFPGNGSAFFS AKFIGSHFYNDSVSEKDISDYMIFDTTLPPKSEEQVLLALERGMDNMNINIYNFTDGCVVLSDTWKLYKIDCETMATISA IKPSIRDDQIGLGYISVMSSAHPVPEVGTSNYFIFLTSMSLIPGIKHKISILRISSVDKREVVGTFEVEEAPYMHSFSAT KNYIILFAHPYHIDILKMMETGTPKDSIQWHPDLPGMIYVMEIKTGKVFTLETETLFSMHHINAFETNDSQPIINVDVAA YPDDSLVDNFEVSIILNKTKRDSIQWQPKLVRFAINLSNLDVKVMGFPFGPNNAIASHLEIPAINEAYRSRPYCYAYGLV FRSDNKTFANFTFVKKDLCDSKGDKSWSIPGHYPMEGWFVPDPSGSAEDDGIIMVPVVNGVDRKSYLAFLDARNLTLINR SNTPFIVPFHFHDGCAVLGDYWDFYKVDCKTIATVTSIKPSTKDANIGLGYTSAMSTAHPVPEVGTSNHFTFLTSMSIVP GVKHKISIFRISSVEKRDLVGQFLVDKAPYMHSFSATKNYIILFAHPYHVDMLKMMKSGIPKDSITWEPDLPGIIYVMEI KTGKVYRFETETLFSMHHINAYEKNNSKSLIYLDLAAYPDVSMINNFEISILLNKTVRDSINWQPQIVRFAIDLAQSEVK VSRFNSIASHLEIPTINEEYRSRHYCYVYGLVYKSDNKTFADFAFAKKDLCDSSGDKSWSIPGHYPMEGWFVPDPSGRAE DDGIVMVPVVNGIDRKSYLAFLDARNLTLINKSSTPFIVPFHFHGRFFSNLTN |