Gene
| Gene Model ID | pfu_aug2.0_216.1_20441 |
|---|---|
| Locus | scaffold216.1 : 204089 ... 219787 : - |
| To GenomeBrowser | scaffold216.1:204089..219787 |
| Genes list of scaffold | scaffold216.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase parkin | GO:0000151 GO:0000209 GO:0000422 GO:0005739 GO:0006351 GO:0007268 GO:0007283 GO:0008104 GO:0008344 GO:0009967 GO:0010468 GO:0010498 GO:0010637 GO:0019904 GO:0030382 GO:0031329 GO:0031399 GO:0031624 GO:0032270 GO:0034976 GO:0042787 GO:0043524 GO:0046329 GO:0048477 GO:0051865 GO:0055069 GO:0061630 GO:0070050 GO:0071310 GO:0071702 GO:0071705 GO:0090141 GO:1903201 GO:1903530 GO:2001243 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_216.1_20441.t1 | 2 | 1 | ubiquitin | 16 | 71 | 4.0e-11 | 42.1 | 1.2e-13 | 3.5e-10 | 39.1 |
| pfu_aug2.0_216.1_20441.t1 | 3 | 1 | IBR | 122 | 134 | 7.8e-18 | 64.1 | 1.6 | 4600.0 | -2.5 |
| pfu_aug2.0_216.1_20441.t1 | 3 | 2 | IBR | 140 | 200 | 7.8e-18 | 64.1 | 1.1e-13 | 3.2e-10 | 39.7 |
| pfu_aug2.0_216.1_20441.t1 | 2 | 2 | ubiquitin | 192 | 205 | 4.0e-11 | 42.1 | 0.11 | 340.0 | 0.7 |
| pfu_aug2.0_216.1_20441.t1 | 3 | 3 | IBR | 236 | 276 | 7.8e-18 | 64.1 | 3.7e-11 | 1.1e-07 | 31.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_216.1_20441.t1 | gi|524879489|ref|XP_005096419.1| | PREDICTED: E3 ubiquitin-protein ligase parkin-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_216.1_20441.t1 | gi|157105276|ref|XP_001648796.1| | AAEL004260-PA [Aedes aegypti] | 9.94922e-44 |
| pfu_aug2.0_216.1_20441.t1 | gi|195428146|ref|XP_002062135.1| | GK17374 [Drosophila willistoni] | 2.99878e-43 |
| pfu_aug2.0_216.1_20441.t1 | gi|197102560|ref|NP_001125521.1| | E3 ubiquitin-protein ligase parkin [Pongo abelii] | 1.99965e-42 |
| pfu_aug2.0_216.1_20441.t1 | gi|169790973|ref|NP_054643.2| | E3 ubiquitin-protein ligase parkin isoform 3 [Homo sapiens] | 1.99965e-42 |
Transcript
| Transcript ID | pfu_aug2.0_216.1_20441.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_216.1_20441.t1 atgtctaactcaattcagttgaatataaagtttaattctacttccatgtgtgtagtagagataaatctgaaagacaatgt tgcagcattgaagagaaaaatatctgacgagactgggtttgatgcagacgaaattcaacttatccttgctgggaagattc tcaatgattatgttgtcatagagaatttacagattggtaactgtacacttctacatgcattccagcagagggtaaatcta cttacagctagaatgccggtggataatcctacaagatatgcaaacgacaataccaaaggaaacatagtcctcgacacatt agacagggaaccccaaggttttgaggatgtactacataatcaggacataagtggggaatgtaagagtgacgagtgtcatg ccagacaaatcgcttatgaacggtataagaactttggtgctgaggagtatgtattacagaacggtggtatactgtgtcca gctattggctgtggtatcggctttctactggagggtaattctaggaaaatcacatgtcctgtctgtaggggtgagttctg tagagagtgtagacaagattatcatgtagatgagaactgtacacaacatatcttggaggaagcttcacaggatgtaaatg ccatgtatgaaagagaactgagagcaaggtgggacacagcatcattagacacgatagggaaaatctccaaaccttgtccc aactgtaggacaaagacagagagagctggtggctgtatgcacatgaaatgttcacggtgtggagaagactggtgctggtt atgtgaaaccaagtggaaccgagaatgccagggaaatcactggtttggataa |
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Protein
| Protein ID | pfu_aug2.0_216.1_20441.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_216.1_20441.t1 MSNSIQLNIKFNSTSMCVVEINLKDNVAALKRKISDETGFDADEIQLILAGKILNDYVVIENLQIGNCTLLHAFQQRVNL LTARMPVDNPTRYANDNTKGNIVLDTLDREPQGFEDVLHNQDISGECKSDECHARQIAYERYKNFGAEEYVLQNGGILCP AIGCGIGFLLEGNSRKITCPVCRGEFCRECRQDYHVDENCTQHILEEASQDVNAMYERELRARWDTASLDTIGKISKPCP NCRTKTERAGGCMHMKCSRCGEDWCWLCETKWNRECQGNHWFG |
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