Gene
| Gene Model ID | pfu_aug2.0_216.1_20443 |
|---|---|
| Locus | scaffold216.1 : 277118 ... 278813 : + |
| To GenomeBrowser | scaffold216.1:277118..278813 |
| Genes list of scaffold | scaffold216.1 |
| Synonym | pfu_aug1.0_55773.1_48839 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| smad nuclear-interacting protein 1 | GO:0010468 GO:0016070 GO:0044763 GO:0050794 GO:0051716 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_216.1_20443.t1 | 1 | 1 | FHA | 174 | 254 | 3.8e-17 | 62.1 | 4.3e-21 | 6.3e-17 | 61.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_216.1_20443.t1 | gi|291241827|ref|XP_002740817.1| | PREDICTED: smad nuclear-interacting protein 1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_216.1_20443.t1 | gi|706111883|ref|XP_010208937.1| | PREDICTED: smad nuclear-interacting protein 1 [Colius striatus] | 0.0 |
| pfu_aug2.0_216.1_20443.t1 | gi|564251809|ref|XP_006264947.1| | PREDICTED: smad nuclear-interacting protein 1, partial [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_216.1_20443.t1 | gi|699698879|ref|XP_009906777.1| | PREDICTED: smad nuclear-interacting protein 1, partial [Picoides pubescens] | 0.0 |
| pfu_aug2.0_216.1_20443.t1 | gi|542167731|ref|XP_005492442.1| | PREDICTED: smad nuclear-interacting protein 1 [Zonotrichia albicollis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_216.1_20443.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_216.1_20443.t1 atgcataatctgctctctggtcttttgcagcatagaagtaaatctgatagaaaaagatctgggagtcacagtcctttcat caagccagacccagatgctgtacccaccagacacaaaatcaaaaaagagagggacagagataggagagatagacatgact ttgatcctcacagaccaataaagagggaaccaagcgacgatcagaggagggagcgaaggcggcatgatgaacgcaggatg gaggcaaggaggggcaggggagctaatccatttgaggaatcatcaggggaattcggacgtacagatggacaatctggaga aaggggtacaaacaagccaaaagaaaaaccaagtctagaactttcagggaaactagctgaagatacaaatatatacaagg gtgtggtaataaagtacaatcaaccacctgaggctagaaagccaaaaacaaggtggcgtttctatcctttcaaaggtgac gaggctttaccccttctacatatacatagacaaagtgcatatctgataggaagggaccgaattgttgtagacattcctgt ggatcacccatcctgctccaaacagcatgctgtgttacagtacaggatggtagagtatgagcgtccggatggtagtagtg gtcgcagggtcagaccgtacattatagatctggattctgccaatggcacgttcgtgaacaatcaaaagattgaacctcag agatttgtagaactcttagagaaagatgttgtcaaatttggattcagtacgcgagaatatgtgttgttgcacgaaaaaac ggacacatctgaggtggataccggggcaacatcagactga |
|
Protein
| Protein ID | pfu_aug2.0_216.1_20443.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_216.1_20443.t1 MHNLLSGLLQHRSKSDRKRSGSHSPFIKPDPDAVPTRHKIKKERDRDRRDRHDFDPHRPIKREPSDDQRRERRRHDERRM EARRGRGANPFEESSGEFGRTDGQSGERGTNKPKEKPSLELSGKLAEDTNIYKGVVIKYNQPPEARKPKTRWRFYPFKGD EALPLLHIHRQSAYLIGRDRIVVDIPVDHPSCSKQHAVLQYRMVEYERPDGSSGRRVRPYIIDLDSANGTFVNNQKIEPQ RFVELLEKDVVKFGFSTREYVLLHEKTDTSEVDTGATSD |
|