Gene
| Gene Model ID | pfu_aug2.0_2163.1_12042 |
|---|---|
| Locus | scaffold2163.1 : 41256 ... 48595 : + |
| To GenomeBrowser | scaffold2163.1:41256..48595 |
| Genes list of scaffold | scaffold2163.1 |
| Synonym | pfu_aug1.0_3356.1_16097 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2163.1_12042.t1 | 3 | 1 | C1q | 32 | 144 | 1.6e-32 | 112.1 | 5.5e-20 | 4.1e-16 | 59.1 |
| pfu_aug2.0_2163.1_12042.t1 | 3 | 2 | C1q | 171 | 201 | 1.6e-32 | 112.1 | 2.2e-05 | 0.16 | 11.9 |
| pfu_aug2.0_2163.1_12042.t1 | 3 | 3 | C1q | 255 | 357 | 1.6e-32 | 112.1 | 1.8e-14 | 1.3e-10 | 41.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2163.1_12042.t1 | gi|556764520|ref|XP_005977529.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 2 [Pantholops hodgsonii] | 9.0e-06 |
| pfu_aug2.0_2163.1_12042.t1 | gi|586468766|ref|XP_006864987.1| | PREDICTED: complement C1q tumor necrosis factor-related protein 2 [Chrysochloris asiatica] | 9.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_2163.1_12042.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2163.1_12042.t1 atggaggaaagacgcgaattcatgcaaagtacatacaaaacacagtgtttacggagtcatcattnttatgcctctaccat tgatacattctctttctctgccaagactaactcatctattgatccaggcagagctccctttcaacatgtatttagcaacg aaggaaactcatatgactcaaattctggaattttcgtatgtccaagggaaggactttactttttcacgtggaccattcag gttgttaaagagcaagtaaagactggattatttgtgaatgggataatccagaaagaattagtaaccattccagctggagg aaacaacgagagcaacacagcaataacaatcttaggcctggtacccggggacacagtccatattgacgtcatacagggca agatgctccctgacgtctgttctttctcaggatggcaaataaaagtgacagatgtattggtgtacacggaatataacaaa aacatctcgaaatattacaccttaagagaatcagacaccggtttcaaccgtaatacgaagatctttaccgtaccaaaatc aggaacctacctgttttatgtgtccaccaatagaggccagaactgtgatacagcactggatgacgccttcttttactccg ggggtgatggtacagcaggggcttttattaagacaatgaattccggccagactgtcaactttaacgtctactgtacattc aacattgtaattttacgtttaggaaccacagagtggttctcggcaagttcaatcggaacaagatcagaagacacaaaaat acttccgtttgacagaaaggtattttcatattatcctagcaatgtgtttgatccctcgaatggtgtttatacctgtggac agagtggtacgtacgtcttggcatggactatagagaacaataaatatcatcagtctgtagcgtccagtctacttgtaaac ggacgtactttgatggaggggtacaccacatcatctctttatggaagcagcaacaatgttgtaatagtttatcttaacca tggtgacaaagtatcgataagaactcatggttttgttgcgggtggttatactatgattactggttttcgtttatcttaa |
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Protein
| Protein ID | pfu_aug2.0_2163.1_12042.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2163.1_12042.t1 MEERREFMQSTYKTQCLRSHHXYASTIDTFSFSAKTNSSIDPGRAPFQHVFSNEGNSYDSNSGIFVCPREGLYFFTWTIQ VVKEQVKTGLFVNGIIQKELVTIPAGGNNESNTAITILGLVPGDTVHIDVIQGKMLPDVCSFSGWQIKVTDVLVYTEYNK NISKYYTLRESDTGFNRNTKIFTVPKSGTYLFYVSTNRGQNCDTALDDAFFYSGGDGTAGAFIKTMNSGQTVNFNVYCTF NIVILRLGTTEWFSASSIGTRSEDTKILPFDRKVFSYYPSNVFDPSNGVYTCGQSGTYVLAWTIENNKYHQSVASSLLVN GRTLMEGYTTSSLYGSSNNVVIVYLNHGDKVSIRTHGFVAGGYTMITGFRLS |
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