Gene
| Gene Model ID | pfu_aug2.0_217.1_23691 |
|---|---|
| Locus | scaffold217.1 : 365415 ... 377859 : - |
| To GenomeBrowser | scaffold217.1:365415..377859 |
| Genes list of scaffold | scaffold217.1 |
| Synonym | pfu_aug1.0_491.1_43703 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_217.1_23691.t2 | 2 | 1 | RNase_Zc3h12a | 11 | 37 | 2.4e-21 | 76.1 | 0.81 | 6000.0 | -3.1 |
| pfu_aug2.0_217.1_23691.t2 | 2 | 2 | RNase_Zc3h12a | 214 | 266 | 2.4e-21 | 76.1 | 9.6e-25 | 7.1e-21 | 74.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_217.1_23691.t2 | gi|471398739|ref|XP_004382538.1| | PREDICTED: probable ribonuclease ZC3H12C [Trichechus manatus latirostris] | 1.00053e-42 |
| pfu_aug2.0_217.1_23691.t2 | gi|564267192|ref|XP_006272411.1| | PREDICTED: probable ribonuclease ZC3H12C, partial [Alligator mississippiensis] | 3.00018e-42 |
| pfu_aug2.0_217.1_23691.t2 | gi|557320120|ref|XP_006033208.1| | PREDICTED: probable ribonuclease ZC3H12C [Alligator sinensis] | 3.99931e-42 |
| pfu_aug2.0_217.1_23691.t2 | gi|699673479|ref|XP_009885204.1| | PREDICTED: probable ribonuclease ZC3H12C [Charadrius vociferus] | 6.00036e-42 |
| pfu_aug2.0_217.1_23691.t2 | gi|612021124|ref|XP_007494931.1| | PREDICTED: probable ribonuclease ZC3H12C isoform X2 [Monodelphis domestica] | 6.99949e-42 |
Transcript
| Transcript ID | pfu_aug2.0_217.1_23691.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_217.1_23691.t1 atgatgattgcagatgagttttacttagatgaagtgaaactacctttaattgaaaggtatttggacagaatagaacaact gtttcatgtgaatttgacgctagttgaaaatgagggtcattccagcgaatccaggaatgtggcacgggtttttgtgtcat cagaaaatatgtcacaggacggtgttgaagaagcgaaaagatacatttcatcgttgctgaaggaagacgaaggcgaacag tgctatgtgaaatacgattttaaagttttaaagatggttcaagaaaaacgcgatgaaattgagaaacagacccaagcagt tataaaagtagatacagaaaacaacgaaatttgtatatttggtccaagtaagtgtgtgttagatgcgaaagacatgattg agaggatcgtttcattggagaattatagcgaagaagtgagaacaaggggaggatttagtgatggaaaaccaaaacaatga |
|
| Transcript ID | pfu_aug2.0_217.1_23691.t2 |
| Definition | - |
>pfu_aug2.0_217.1_23691.t2 atggaaaaccaaaacaatgaagagatatgtagagattttgtcgatgggacagaatgccagattctagaatctaatagtga tgatggggacaatatagggacggataacgatactagtctacaaatagatggcgctcctatagacacgggtacaagtcaaa acatcagctcaaattttatattatcaacattaaatagtaaagggggtaaaatgcaaccttgcgtgaatcctcttttgaaa agggaaaacagtgtgatttgtgatagtgacttggcggagtcaagttctctagtctgtgataaagaagttcaaaaattaaa taaatgtctctctagtcagtcatcatgttcatcaacttctacagaggaaagtgaacatgaacaacccgtaaaacaggttc acgacaggactaaggtggaattcgcattaaaacttggctactcagaggtacagttgaccgctgtgttaaaaaagcttgga ccggacgccgggaagaatgaaatcctgtcagaattgatatcactggtttcagaggataattcggacacggactctgatga caattcggacagtttgaaattcggtcaagaattgagcgacctggagaaagttataaaagagaaggaaggaggagactcga aactacgacctattgttatagacggaagtaatgtagctatgagtcatgggaacaaagaaatattttcctgtaaaggtatc aagattgctgttgattggttccttgacagaggacatgacgtcatcactgtctttgtcccgcagtggcggaaggaaacatc cagacctgacgcaaaaattacagttattgacagttag |
|
Protein
| Protein ID | pfu_aug2.0_217.1_23691.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_217.1_23691.t1 MMIADEFYLDEVKLPLIERYLDRIEQLFHVNLTLVENEGHSSESRNVARVFVSSENMSQDGVEEAKRYISSLLKEDEGEQ CYVKYDFKVLKMVQEKRDEIEKQTQAVIKVDTENNEICIFGPSKCVLDAKDMIERIVSLENYSEEVRTRGGFSDGKPKQ |
|
| Protein ID | pfu_aug2.0_217.1_23691.t2 |
| Definition | - |
>pfu_aug2.0_217.1_23691.t2 MENQNNEEICRDFVDGTECQILESNSDDGDNIGTDNDTSLQIDGAPIDTGTSQNISSNFILSTLNSKGGKMQPCVNPLLK RENSVICDSDLAESSSLVCDKEVQKLNKCLSSQSSCSSTSTEESEHEQPVKQVHDRTKVEFALKLGYSEVQLTAVLKKLG PDAGKNEILSELISLVSEDNSDTDSDDNSDSLKFGQELSDLEKVIKEKEGGDSKLRPIVIDGSNVAMSHGNKEIFSCKGI KIAVDWFLDRGHDVITVFVPQWRKETSRPDAKITVIDS |
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