Gene
| Gene Model ID | pfu_aug2.0_2170.1_02023 |
|---|---|
| Locus | scaffold2170.1 : 70580 ... 81585 : - |
| To GenomeBrowser | scaffold2170.1:70580..81585 |
| Genes list of scaffold | scaffold2170.1 |
| Synonym | pfu_aug1.0_4703.1_52341 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nuclear receptor | GO:0005488 GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2170.1_02023.t1 | 2 | 1 | zf-C4 | 20 | 88 | 1.9e-22 | 79.2 | 2.6e-26 | 1.9e-22 | 79.2 |
| pfu_aug2.0_2170.1_02023.t1 | 2 | 2 | zf-C4 | 117 | 123 | 1.9e-22 | 79.2 | 1.9 | 14000.0 | -3.7 |
| pfu_aug2.0_2170.1_02023.t1 | 1 | 1 | Hormone_recep | 343 | 498 | 9.8e-14 | 50.9 | 3.5e-17 | 2.6e-13 | 49.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2170.1_02023.t1 | gi|524882301|ref|XP_005097795.1| | PREDICTED: nuclear hormone receptor family member nhr-41-like isoform X1 [Aplysia californica] | 1.0e-22 |
| pfu_aug2.0_2170.1_02023.t1 | gi|524882368|ref|XP_005097828.1| | PREDICTED: uncharacterized protein DDB_G0283357-like [Aplysia californica] | 2.0e-21 |
| pfu_aug2.0_2170.1_02023.t1 | gi|524888537|ref|XP_005100838.1| | PREDICTED: flocculation protein FLO11-like [Aplysia californica] | 2.0e-21 |
| pfu_aug2.0_2170.1_02023.t1 | gi|524882370|ref|XP_005097829.1| | PREDICTED: uncharacterized protein LOC101861888 [Aplysia californica] | 5.0e-21 |
| pfu_aug2.0_2170.1_02023.t1 | gi|322812857|gb|ADX20591.1| | E75 nuclear receptor, partial [Aplysia californica] | 5.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_2170.1_02023.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2170.1_02023.t1 atggataaaacaaagtcaataggccaacggaagaagaagagccagttggtgctgcctccatgccgtgtctgtgaagggaa cgctacaggcatacattatggtgtccttacctgccagggatgtaaggcttttttccaacgctaccagaaaagaaaagagc cgtacgtgtgttccagaaacgggaactgtgatatagtggcccgtaaaaggggtatctgctcggcatgtagggtagaaaaa tgtacaaggcttggaatgtctaaaacaggtattcgccttggccgatacactctcactgagagaacggaaaccataaagga agtaaaaagtatagcagtaaaaggaacgcggaaaacctgtaacgtaaaccacaatccgaatcaaagatctcaaaaactat ttaatttgctcttagataaacttaaggatattgaaaaagaacagatagatacaatttgctggtgcgctaagatggagaag gaggagaaatcaacatcattggaggagtgtaccttctcaaatcccgacaacaggggctctgttggcacagaagattctgt gttaactcataccgacgatgtccatctacatgtatgtgatgatctagagtttgattctccgtgtttacaagatcttgtat ttaatatgggtcctccaatttccccgcaatctgtctccacttttctacagaatacagaaaatgccatgtacatagatttt atccaggaagacagttgtagcgtgattcctgtttccaacaataacccaaaatgtatagaagaactaacagaatcttatct aaggatgattgtagcacccgatctgtctactgaggacatcaaagacatgctgaagttgaaaaatgagaaatataaagaga aaactcaaatatttggagagatgaaagcattgtcactagaagaatatcgatctatacatcaactaacggggttagacgtg gatgggagattggaactggtgaagaaactcgctattttacaaagagaatcgtggagacaacgcttcaactttgccgtaaa aatcccaggttttgtttcattgcataatgaggatcaagaatcacttattatggcctcagcgtttgaatgtgagctactgt gttgttatcgtggtgtagaccctgagcttggcatggtattgctgaaaactggtgatgtgtttcatatagaccaactcagt ggaatgttcgaatcaaacgaaaagtgcatgttaaacttgaaaatgtgcaagaaaattcaagacttagatctaacgaatca ggagctagccttatgcctaggaataaccctgacatttcaagatagacgaagactcagaaaccctggtaatgttgaagaaa tacagctgcatctggtttcacagttacaacagctgctgcaacagcgtcagtccaccaaggcgtctagtatcttctacaag atcatcgatatgctcagtaacctccgagggttcacagaggaaactcgcaagtctttcagcaaactttaccaggatgaatt caccagacagatatgtccctatgtaccagcaacatgtttaatagaatactga |
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Protein
| Protein ID | pfu_aug2.0_2170.1_02023.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2170.1_02023.t1 MDKTKSIGQRKKKSQLVLPPCRVCEGNATGIHYGVLTCQGCKAFFQRYQKRKEPYVCSRNGNCDIVARKRGICSACRVEK CTRLGMSKTGIRLGRYTLTERTETIKEVKSIAVKGTRKTCNVNHNPNQRSQKLFNLLLDKLKDIEKEQIDTICWCAKMEK EEKSTSLEECTFSNPDNRGSVGTEDSVLTHTDDVHLHVCDDLEFDSPCLQDLVFNMGPPISPQSVSTFLQNTENAMYIDF IQEDSCSVIPVSNNNPKCIEELTESYLRMIVAPDLSTEDIKDMLKLKNEKYKEKTQIFGEMKALSLEEYRSIHQLTGLDV DGRLELVKKLAILQRESWRQRFNFAVKIPGFVSLHNEDQESLIMASAFECELLCCYRGVDPELGMVLLKTGDVFHIDQLS GMFESNEKCMLNLKMCKKIQDLDLTNQELALCLGITLTFQDRRRLRNPGNVEEIQLHLVSQLQQLLQQRQSTKASSIFYK IIDMLSNLRGFTEETRKSFSKLYQDEFTRQICPYVPATCLIEY |
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