Gene
| Gene Model ID | pfu_aug2.0_219.1_30437 |
|---|---|
| Locus | scaffold219.1 : 1 ... 12344 : + |
| To GenomeBrowser | scaffold219.1:1..12344 |
| Genes list of scaffold | scaffold219.1 |
| Synonym | pfu_aug1.0_43612.1_05257 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_219.1_30437.t1 | 1 | 1 | RRM_1 | 15 | 80 | 9.6e-14 | 50.7 | 2.8e-17 | 1.4e-13 | 50.2 |
| pfu_aug2.0_219.1_30437.t1 | 1 | 1 | RRM_6 | 15 | 80 | 9.5e-09 | 35.1 | 2.9e-12 | 1.5e-08 | 34.5 |
| pfu_aug2.0_219.1_30437.t1 | 1 | 1 | RRM_5 | 32 | 85 | 9.8e-07 | 28.5 | 2.9e-10 | 1.4e-06 | 28.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_219.1_30437.t1 | gi|585717763|ref|XP_006825753.1| | PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X1 [Saccoglossus kowalevskii] | 1.99965e-42 |
| pfu_aug2.0_219.1_30437.t1 | gi|585717767|ref|XP_006825754.1| | PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X2 [Saccoglossus kowalevskii] | 2.0e-39 |
| pfu_aug2.0_219.1_30437.t1 | gi|676447544|ref|XP_009051442.1| | hypothetical protein LOTGIDRAFT_228226 [Lottia gigantea] | 3.0e-39 |
| pfu_aug2.0_219.1_30437.t1 | gi|524894442|ref|XP_005103718.1| | PREDICTED: serine/arginine-rich splicing factor 4-like [Aplysia californica] | 3.0e-37 |
| pfu_aug2.0_219.1_30437.t1 | gi|241671135|ref|XP_002399999.1| | alternative splicing factor SRp20/9G8, putative [Ixodes scapularis] | 8.0e-33 |
Transcript
| Transcript ID | pfu_aug2.0_219.1_30437.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_219.1_30437.t1 gcagagtcagttcgcacgccatgtctcgtcgcggcgagggtagtttgttcattggaagactgagtaaagctacaagggta cgtgatgtagaggatgtatttgaaccatatggacgaatgacaagatgtgaagtcaagtatggagctgaaatgggttatgg gtttgttgactttgaagaccgcagggatgcagaggatgcactgaggtatgagaatggaagggatatttgtggttccagca ttatagtagaatgggcgaaaggaaacccacgcagagcaccagccagggggtcatatgacgattacagaggtcgtagagga gggcagtttggaagagactaccctgatgacagatatggaggaggagggggcaggcgacggggcggaaggtaccgctctcc gtccccacgtaggaggagaaggtcaagatcaaggtcaagagatagaaggagatctaggtcacgcagtaggagcagagaca ggaggagatcttacaggtcaaggtcaaggagtgatgaaaggaaaaggagcaggtcaaagtctcgaagtcgatcacacagc aaatcaaagtcaaaaagtcgcacaccagcatcaaagtcacggagcagatctccacaacaagacaataccatggataacgg agaaaggtcaccggtaaatgatgactaa |
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Protein
| Protein ID | pfu_aug2.0_219.1_30437.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_219.1_30437.t1 RVSSHAMSRRGEGSLFIGRLSKATRVRDVEDVFEPYGRMTRCEVKYGAEMGYGFVDFEDRRDAEDALRYENGRDICGSSI IVEWAKGNPRRAPARGSYDDYRGRRGGQFGRDYPDDRYGGGGGRRRGGRYRSPSPRRRRRSRSRSRDRRRSRSRSRSRDR RRSYRSRSRSDERKRSRSKSRSRSHSKSKSKSRTPASKSRSRSPQQDNTMDNGERSPVNDD |
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