Gene
| Gene Model ID | pfu_aug2.0_219.1_30456 |
|---|---|
| Locus | scaffold219.1 : 401104 ... 409122 : + |
| To GenomeBrowser | scaffold219.1:401104..409122 |
| Genes list of scaffold | scaffold219.1 |
| Synonym | pfu_aug1.0_10099.1_31877 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_219.1_30456.t1 | 2 | 1 | MMR_HSR1 | 83 | 104 | 9.9e-10 | 38.3 | 4.8 | 3500.0 | -2.1 |
| pfu_aug2.0_219.1_30456.t1 | 2 | 1 | AIG1 | 92 | 136 | 1.1e-37 | 129.2 | 2.8 | 2000.0 | -2.4 |
| pfu_aug2.0_219.1_30456.t1 | 1 | 1 | DUF258 | 199 | 278 | 4.3e-07 | 29.2 | 9.7e-10 | 7.2e-07 | 28.5 |
| pfu_aug2.0_219.1_30456.t1 | 2 | 2 | AIG1 | 214 | 337 | 1.1e-37 | 129.2 | 2.1e-40 | 1.5e-37 | 128.7 |
| pfu_aug2.0_219.1_30456.t1 | 2 | 2 | MMR_HSR1 | 215 | 315 | 9.9e-10 | 38.3 | 3.7e-12 | 2.7e-09 | 36.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_219.1_30456.t1 | gi|584027968|ref|XP_006808526.1| | PREDICTED: GTPase IMAP family member 7-like [Neolamprologus brichardi] | 2.0e-30 |
| pfu_aug2.0_219.1_30456.t1 | gi|499051598|ref|XP_004576304.1| | 5.0e-30 | |
| pfu_aug2.0_219.1_30456.t1 | gi|554886468|ref|XP_005952811.1| | PREDICTED: putative golgin subfamily A member 6-like protein 6-like [Haplochromis burtoni] | 9.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_219.1_30456.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_219.1_30456.t1 atggagttagatgcattcgattcattatcaaccgttcaagaagttcataactgtctacggaaaaagatttgtctggacta tttaccgaattatcccaaggacaacagaaaatcgttcctggtgttcaaagccaacagtcgtaattacctcagtgtagcgg agtacagtctaggtgatcctacgaggatatttgacgcgttggaaacaaaaggcaagataaggcccggtgaatactccaca ttgacatggcttgtagttgatgcggacaaaagaatcctcggtttaatatatactgctgagaaacgaatcaaacaaataat tgatgcaagcaaagtgagaaaacaaaacaacattcagaggacggaactttgtgacgccgatgaaaacttaattcacaaag aaaatggtcattttccaggaaccatgcctatcatcgttgtgttttccgtttgcttccttgctatggtcctgacaaagaca gcccaatctgagaacaacgtcaactattgtccatcagatagcttcctatcatatgttatgaaggagattagagagtgcaa agtaagagatacgaaagcattgcctgaaaaaccaccaaccaacaatactgaacatatacaagatattgttggagatgagt taaggatcttgctaatcggaaaaaccggtgttggaaaaagtacaacaggaaacagaatccttggtagaaatgaattcaaa acggatacatcagatgagtctgtaacatcagaaaccacacttggtcaggcgagtcggtttgggaagaaattaatggtagt cgataccccgggtctgtttgacactaaacgcagcaacgaagagacaattagcgagatcataaagtgctatggaataaccg cgcctgggctacatgcaatcctgttgattcaagatgtagggagaatgaccgatgagcagattaaaaccatagagattttt gaggagagatttggcaagaacttagatagatttttgatactggtttttntaaacttattcagtctctga |
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Protein
| Protein ID | pfu_aug2.0_219.1_30456.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_219.1_30456.t1 MELDAFDSLSTVQEVHNCLRKKICLDYLPNYPKDNRKSFLVFKANSRNYLSVAEYSLGDPTRIFDALETKGKIRPGEYST LTWLVVDADKRILGLIYTAEKRIKQIIDASKVRKQNNIQRTELCDADENLIHKENGHFPGTMPIIVVFSVCFLAMVLTKT AQSENNVNYCPSDSFLSYVMKEIRECKVRDTKALPEKPPTNNTEHIQDIVGDELRILLIGKTGVGKSTTGNRILGRNEFK TDTSDESVTSETTLGQASRFGKKLMVVDTPGLFDTKRSNEETISEIIKCYGITAPGLHAILLIQDVGRMTDEQIKTIEIF EERFGKNLDRFLILVFXNLFSL |
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