Gene
| Gene Model ID | pfu_aug2.0_220.1_00450 |
|---|---|
| Locus | scaffold220.1 : 130076 ... 153385 : + |
| To GenomeBrowser | scaffold220.1:130076..153385 |
| Genes list of scaffold | scaffold220.1 |
| Synonym | pfu_aug1.0_3044.1_44559 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_220.1_00450.t1 | 1 | 1 | ubiquitin | 280 | 341 | 5.4e-09 | 35.3 | 5.3e-12 | 1.3e-08 | 34.0 |
| pfu_aug2.0_220.1_00450.t1 | 5 | 1 | IBR | 496 | 505 | 1.6e-07 | 31.0 | 1.1 | 2600.0 | -1.7 |
| pfu_aug2.0_220.1_00450.t1 | 5 | 2 | IBR | 651 | 668 | 1.6e-07 | 31.0 | 0.0053 | 13.0 | 5.7 |
| pfu_aug2.0_220.1_00450.t1 | 5 | 3 | IBR | 703 | 763 | 1.6e-07 | 31.0 | 7.3e-09 | 1.8e-05 | 24.5 |
| pfu_aug2.0_220.1_00450.t1 | 5 | 4 | IBR | 787 | 827 | 1.6e-07 | 31.0 | 7.1e-08 | 0.00018 | 21.3 |
| pfu_aug2.0_220.1_00450.t1 | 5 | 5 | IBR | 850 | 861 | 1.6e-07 | 31.0 | 6.0 | 15000.0 | -8.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_220.1_00450.t1 | gi|478519382|ref|XP_004433913.1| | PREDICTED: ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform 1 [Ceratotherium simum simum] | 0.0 |
| pfu_aug2.0_220.1_00450.t1 | gi|488545016|ref|XP_004464046.1| | 0.0 | |
| pfu_aug2.0_220.1_00450.t1 | gi|488545018|ref|XP_004464047.1| | PREDICTED: ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X4 [Dasypus novemcinctus] | 0.0 |
| pfu_aug2.0_220.1_00450.t1 | gi|488545014|ref|XP_004464045.1| | PREDICTED: ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform X1 [Dasypus novemcinctus] | 0.0 |
| pfu_aug2.0_220.1_00450.t1 | gi|478519384|ref|XP_004433914.1| | PREDICTED: ranBP-type and C3HC4-type zinc finger-containing protein 1 isoform 2 [Ceratotherium simum simum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_220.1_00450.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_220.1_00450.t1 atggccactttcagcacttcttctgcagctcagataatcctcaatcttgatctgaacaaacttggcactaaagatctgaa gtattctataaagtcagagaaatggcaccagatagcagtgaggaggggagataggtacacctaccctgtgttacacttag acgatgaggagtgtaatctgacatactttaacgagatactcacatctgtgatctgtactatacaggatagtgtaaaacaa ggccacaaacttcttgctacttacagactaattgcctacaaatctacgcaaccaaaagctgccagtgaaaagtcaacaga gcagtctttagtaggcactaatcgtgaatcggagatttcaccaattttgcatgaaaaatcaaaggaacactacaaactgc aagtgactcagtctctgccagtgcatgttgagagatattgttctgaaacgtcaaatcatgatttaataaagaaaccttgg tcatctgaaaagaagcgagagaaaactccattttttgaatgctcgttgccacggccagtttcccctgagagattgaggaa ggaattcctagaaacatttagggaaagtatagatgaacagtctgtgtacgaagaaatgattcagcctaaatcaaaagagg atatcgtaaaacaactcggagagcttttgtcgactgccatcaattccggagagaaggaaaatgctgaaaagttcgctggc cagcttgcattgacaggtgctagggtgaccattactgtcgatacaagtagtctgaagaaagatgtcaaagaccaagactt cagcatcaaggtatttgtagaagacagagaggcatcaggaggatgtattgacctcaaggtcaaggccactgatactgtcc ttgacctgaagaataagatgtttatgaagcacaactttccggtagaagtacaaaagtggataatcggtaaaagaatgccg ccagacacggaaacgctacaaaaggccaaggtcacagcgggacagtctctgtttctatatttagtgtctgcaaaatctgt aggactcactcgagaggaattcaatgctcgaaaggaacaaatgatatacaatcaaggccagcctaggagttttggtatac agaatttcaatgaatctggggattatatgaggatgaatcctcgcacccctgtgacccctcagtctggtcagttctccagc caaccccccaggtctaacccctcccccggtatcagacctacccagcccacccctccacatcaaggtgcctctgtcaggaa gcaggagtctcgggagggtaaggctccccaggttaaaccccccacccaccagggggagtccagacagactgtacgcaagc cagaatctcagcagccaaaggatcagtcgtttgaattcctggattatcctccagaattacgacaagatcccctcgcaaac cccatggcagcacctatagcagcaagcaccgagcctaaacaggtaggctggacatgccctgactgtacctatattaataa gcccacctggccaggctgtgaaatctgctccaaaactcgacctcttacgtataaaatacctgataattataaaatgacca aagaggaagaagagagactgaaacgagagcaagaaagtgaacagcgtgctcaaaaggcagcggctgagaggcgtccgaga gagatgacaaacgacgaagtgattacaaatctggatgaacggcaactcgatcaacttctcaaattcaacgacgcgcttca aggttcgtttgtgcaaggaagaggcttaactgcaagaagtgctgtagaaagtgctaatacacagaatctcccttttggac cccagccaaccatacccacagaaaatcagcagttacctgcccctgccttagggtataatatcccaccagatggcgctgat accggtgtacaagagggagtcatactcagggaatgtctacattcattctgcaaggaatgtcttaaaggtgctgtacaaca taacgatgaggccaatattcggtgtccgtaccaggacgatatctactcctgtcaagcctcactacaggacagggaagtta aatcacttgtacctccagaaatatttgagaagtacctccaacgcagtctgaccactgcagaaagtcaggagaggaacagt ttccattgtaaaaccacagattgtcagggttggtgtatttacgaggacgctatcaacttctttgagtgtcctatctgtgg caagaagaactgtctgacgtgtaaagccatacatgagggtatgaactgtaaacagtatcaggaggacattaaactcaggg cggctaatgacgcggcagccagacaaacccagctcatgctcacggaaatggtgaagaaaggagatgcaatgaattgtcct cagtgtgacgtcattctacaaaagaaggacggttgtgattggataaaatgttctatttgtaaaacagaaatctgttgggt gacgaaaggaagaagatggggtcctttgggtcctggtgacatcagtggcgggtgtatgtgcagggtaaacgggagaaagt gtcatgagcaatgtaataattgtcactga |
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Protein
| Protein ID | pfu_aug2.0_220.1_00450.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_220.1_00450.t1 MATFSTSSAAQIILNLDLNKLGTKDLKYSIKSEKWHQIAVRRGDRYTYPVLHLDDEECNLTYFNEILTSVICTIQDSVKQ GHKLLATYRLIAYKSTQPKAASEKSTEQSLVGTNRESEISPILHEKSKEHYKLQVTQSLPVHVERYCSETSNHDLIKKPW SSEKKREKTPFFECSLPRPVSPERLRKEFLETFRESIDEQSVYEEMIQPKSKEDIVKQLGELLSTAINSGEKENAEKFAG QLALTGARVTITVDTSSLKKDVKDQDFSIKVFVEDREASGGCIDLKVKATDTVLDLKNKMFMKHNFPVEVQKWIIGKRMP PDTETLQKAKVTAGQSLFLYLVSAKSVGLTREEFNARKEQMIYNQGQPRSFGIQNFNESGDYMRMNPRTPVTPQSGQFSS QPPRSNPSPGIRPTQPTPPHQGASVRKQESREGKAPQVKPPTHQGESRQTVRKPESQQPKDQSFEFLDYPPELRQDPLAN PMAAPIAASTEPKQVGWTCPDCTYINKPTWPGCEICSKTRPLTYKIPDNYKMTKEEEERLKREQESEQRAQKAAAERRPR EMTNDEVITNLDERQLDQLLKFNDALQGSFVQGRGLTARSAVESANTQNLPFGPQPTIPTENQQLPAPALGYNIPPDGAD TGVQEGVILRECLHSFCKECLKGAVQHNDEANIRCPYQDDIYSCQASLQDREVKSLVPPEIFEKYLQRSLTTAESQERNS FHCKTTDCQGWCIYEDAINFFECPICGKKNCLTCKAIHEGMNCKQYQEDIKLRAANDAAARQTQLMLTEMVKKGDAMNCP QCDVILQKKDGCDWIKCSICKTEICWVTKGRRWGPLGPGDISGGCMCRVNGRKCHEQCNNCH |
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