Gene
| Gene Model ID | pfu_aug2.0_220.1_00453 |
|---|---|
| Locus | scaffold220.1 : 175025 ... 183208 : + |
| To GenomeBrowser | scaffold220.1:175025..183208 |
| Genes list of scaffold | scaffold220.1 |
| Synonym | pfu_aug1.0_21203.1_11359 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_220.1_00453.t1 | 2 | 1 | DNA_pol_B_2 | 190 | 384 | 5.5e-24 | 84.6 | 1.1e-19 | 1.7e-15 | 56.7 |
| pfu_aug2.0_220.1_00453.t1 | 2 | 2 | DNA_pol_B_2 | 556 | 777 | 5.5e-24 | 84.6 | 2.6e-12 | 3.9e-08 | 32.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_220.1_00453.t1 | gi|72077346|ref|XP_793143.1| | 0.0 | |
| pfu_aug2.0_220.1_00453.t1 | gi|115733109|ref|XP_781219.2| | PREDICTED: uncharacterized protein LOC575748 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_220.1_00453.t1 | gi|637318604|ref|XP_008112294.1| | PREDICTED: uncharacterized protein LOC103279368 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_220.1_00453.t1 | gi|512863654|ref|XP_004917469.1| | 0.0 | |
| pfu_aug2.0_220.1_00453.t1 | gi|642940372|ref|XP_008191146.1| | PREDICTED: uncharacterized protein LOC103312396 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_220.1_00453.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_220.1_00453.t1 atggctaccgactattccaagacagaatacaccgaagatgaagatgaagagaattcagaggcatcaaactaccagaggaa gcaatccatattgaagaaatatacaatgaataggtccaacatctcagacacaggcgaaatacagttagccgctattgcag agggattctgtctcttagaagatagaattttacatgcatcacgtactcatattagcatttcaactgtgaaagaagaactt ttggagtcaatagaaagtaggaacgatggcgatattgggttcgtcacgagataccggatgtcctctcagtttgtccattg cgatggagagtacttgtaccacagagacagagatggaacgctcttatgcaaggtttccatttcttcggaaacatattgtc ctcgtggtctaggggtggattacgctggaaacatgtacgtttgttgcgttgactcgatggagtctgcaaaactattgcag atttcggaaacatgcggtcgaagggagatgatttttcgtggagaaacaacgatgttagaattttgtaactacatcacaca atattactgtaaaaattacatttttctcgctcacaacgctaggagctttgatctatatccggtattggaaactctcatcg acagacatggaattaaacctgataggatcatttatagcggctcaaaaattatgtacatgcatatagcagaacttctcaac ttgacgtttttggatttgttaaattttcttccgatgaaactgcttgaaattccggatgtgtttggtctggaagagttaag taaagggtactttccgcatttgtttaataccaaattaaaccaaaactattcaggaaaatatccgccgccttcagattacg ggtgtgaaaccatgtcatctaacgaaagaaaaaagttctttaaatggtacacagaaaaacaaaacgaaaattttaatttt caacatgagatgttgaactactgtcgatcagatgttgacatattaagaagaggatgtatggaatttcgtgaaatgatgat ggaagtaactggagggatagacccttttagttatgtgacaatagccagtgtttgcatgggcatctttaaaacgctttttc ttcaagagcagaatgaactagaggttacagacaccgataaagaatcatcctcttggcttccggtcaaattcaaagacggc gataattttgtgtactacgatagtgtttggatcccattggaggaaatcggctctaaagaaaacatcaaacttggaaaagt taggttttgcaaaagtccgataactgctattccctctaccggatacgtacccaatgacaactacagcaaatatctattga gatgcacgttccatggatgcacgacatgttatccaaaggaccgttcaacattgcttcatccctctacaaagcaaactgtg gaggagctttacaccgtaacaatgaagagggaaaaagaacttcggaccagaggttacaaagttgtcacgaagtgggaaca tgaattccatcttgacatgaagagaaatgacaacttgcgtacctttgtgaacggattagacttacaagaaagacttaatc cacgagatagtttttttttgggggggggggggcgcacaaatgctgtcaaacttcattacagaaaagaacaaggagaaacg attgaatactatgactttacaagtttatacccatggacaaacaaatattgtagatatccgataggtcatcccacaattat tacggataattttaaagatatgtctgaatatttcggtctagcaaagattaagattttgccgcaaagaggtttatatcatc ctgtattaccttattcctcaaacggtaaactgaaatttccgttatgtagacaatgcgcggatacggaaagtgcagcgtcg tgtacttgttccgacgaagaaagatcccttattggaacatggtgcacacctgagatcgatattgctttaaagaaaggcta caaaatatcgaaaatttacgaagtgtaccattttcaagaatctactaaatacgatccagccagtcgggaaggaggtctct tcgcagagtatgtaaaaatgtttttgaaaataaaacaggaagcttcgggatttccgactaactgtgagacagaggaggag aagagagattacattaaaacttacgaagaaaacgaagggataaaacttgactatgatataattgtgaaaaataaaggttt gcgcagtttggctaaattgtgtcttaccattttttgggggaaatttgggcaaagactaggactcaaacagtctcaattta tacacgaatcagacgtagaatctctctttaaaattctgaccgatcctagaaagcaattacataactttcatatcatcaca aaagatataatgcaaatagaatggaatgaggatcctctgtttttagcgttcgatcctaaagcaaacatatttctagcatc tttcacaacgatttgggctagacttagactgtatagtgttttggacgtattggggagagatgttctttattacgatacag acagtgttatttttcgcagcagagaaaccgatgatttaaaagtcaaaatacctattggttattatttaggagaacttaca aatgaaataagtcaggaagatgtacatataaccgagtttgtttctggaggacctaaaaattatgcatatagaacattgtc tggaaaggaagagtgtaaagtcagaggatttacattaaactggactaatgctcagctcatcaacttcagtgctgttaaaa tatga |
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Protein
| Protein ID | pfu_aug2.0_220.1_00453.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_220.1_00453.t1 MATDYSKTEYTEDEDEENSEASNYQRKQSILKKYTMNRSNISDTGEIQLAAIAEGFCLLEDRILHASRTHISISTVKEEL LESIESRNDGDIGFVTRYRMSSQFVHCDGEYLYHRDRDGTLLCKVSISSETYCPRGLGVDYAGNMYVCCVDSMESAKLLQ ISETCGRREMIFRGETTMLEFCNYITQYYCKNYIFLAHNARSFDLYPVLETLIDRHGIKPDRIIYSGSKIMYMHIAELLN LTFLDLLNFLPMKLLEIPDVFGLEELSKGYFPHLFNTKLNQNYSGKYPPPSDYGCETMSSNERKKFFKWYTEKQNENFNF QHEMLNYCRSDVDILRRGCMEFREMMMEVTGGIDPFSYVTIASVCMGIFKTLFLQEQNELEVTDTDKESSSWLPVKFKDG DNFVYYDSVWIPLEEIGSKENIKLGKVRFCKSPITAIPSTGYVPNDNYSKYLLRCTFHGCTTCYPKDRSTLLHPSTKQTV EELYTVTMKREKELRTRGYKVVTKWEHEFHLDMKRNDNLRTFVNGLDLQERLNPRDSFFLGGGGRTNAVKLHYRKEQGET IEYYDFTSLYPWTNKYCRYPIGHPTIITDNFKDMSEYFGLAKIKILPQRGLYHPVLPYSSNGKLKFPLCRQCADTESAAS CTCSDEERSLIGTWCTPEIDIALKKGYKISKIYEVYHFQESTKYDPASREGGLFAEYVKMFLKIKQEASGFPTNCETEEE KRDYIKTYEENEGIKLDYDIIVKNKGLRSLAKLCLTIFWGKFGQRLGLKQSQFIHESDVESLFKILTDPRKQLHNFHIIT KDIMQIEWNEDPLFLAFDPKANIFLASFTTIWARLRLYSVLDVLGRDVLYYDTDSVIFRSRETDDLKVKIPIGYYLGELT NEISQEDVHITEFVSGGPKNYAYRTLSGKEECKVRGFTLNWTNAQLINFSAVKI |
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