Gene
| Gene Model ID | pfu_aug2.0_220.1_00454 |
|---|---|
| Locus | scaffold220.1 : 183352 ... 188714 : - |
| To GenomeBrowser | scaffold220.1:183352..188714 |
| Genes list of scaffold | scaffold220.1 |
| Synonym | pfu_aug1.0_21203.1_11360 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_220.1_00454.t1 | 1 | 1 | CARD | 7 | 89 | 3.1e-09 | 36.5 | 6.7e-13 | 5.0e-09 | 35.8 |
| pfu_aug2.0_220.1_00454.t1 | 3 | 1 | PC4 | 136 | 183 | 2.1e-14 | 52.4 | 8.0e-13 | 6.0e-09 | 35.0 |
| pfu_aug2.0_220.1_00454.t1 | 3 | 2 | PC4 | 223 | 259 | 2.1e-14 | 52.4 | 1.0e-06 | 0.0075 | 15.4 |
| pfu_aug2.0_220.1_00454.t1 | 3 | 3 | PC4 | 497 | 506 | 2.1e-14 | 52.4 | 0.79 | 5900.0 | -3.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_220.1_00454.t1 | gi|260815414|ref|XP_002602468.1| | hypothetical protein BRAFLDRAFT_86852 [Branchiostoma floridae] | 8.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_220.1_00454.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_220.1_00454.t1 atggaaggcaaacataaggatatcataaaaagacattatgaacaattgctgaagaagatggatgtaaaaaaagtcattat gcatttacataatgctaagatgttgaccgatgaaatgaagaaaaatatcgagagagaaaacggtcgatatgcaaaaggca ggaagttgttggacatcattacacatagagggtctcatgcatttacagccttgaggatatctttaataaaagctggtaac ttctctttagcaaaagagttacaacaggatttgatgtcacttacaagtgaaacaaaagacgagtcggagtgtggtgaatc attgatttggacaacaatactgaaaaaaactgacaaaaaagaagacaagagaccaaaaatcggcaaaaatgagcggaggt gtatgatcaacgtcggtgataatgtttttgtggtcgcaaaaacatacaaagatgatatgaatatacatataagacagttt gacgaaaatgaagacggaaggttgtttccaaccaagaaaggagttacctttcccttgaagagatgggttttcttcgaatc tatggtatcggatattgcagaagggctgaagacctactcagacttagagtcggaacaaacatggcatctcggtggtggtg tttacgcatctattacacccgaatatccgacagtcaatattcgacacttttggcaacctggtgatgctacagaacccatt ccgaccaagagaggaataatactgaacaattttcgcttcggcaaactacagaaggccatgggagaaattaaggagtgtgt cccagaaacgaacgatgttacaccgtagaagacattcaatccatacaaatatagacctaaacagaaagggagaggatgga cttacaagcagtcatatcgtatacctatcagaccacacagtgaaatcaacgttcaaccgagtgtacctctagtcacacca gttgcggccgtagaagaaagggtaaaagatgaatacaaaaaagatgtccaggaaggaaacccacacattaacccagatcg ggatgcaatgtctttcttaagtagtgacagtactgaaatcgaccaacctatggaactttctatttttgctgaaccagcta atcaggtagcagttgaaaaagtgtacttttctgaagcaagacctatatcgagcattgaatctgaggacacacctatcgaa atagttgtctctggatctggagctgaatatacagatctaaggaaaagtcgtctcggaagagacgaacttctgtctctaaa acaggcagagctcttcatcaaagaaacgggaaatctctctgatgctgcatcagtcagtggcggaaacgttggtttagtta tgagatacgcgtacaccaaaaaaagtttcatttttgaattggaagatgaggaaaccggtgatatgttcgatgtttactcc aaacataatgacaagaaaaaacgtttccaatgtgttaaacgaaagaaatcacagactggaaaagggttaagtgtaaaatc caaaactatcggaaaaccacctggaagttcaatgaagaaaagcacaaaaataacatggttaacttactga |
|
Protein
| Protein ID | pfu_aug2.0_220.1_00454.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_220.1_00454.t1 MEGKHKDIIKRHYEQLLKKMDVKKVIMHLHNAKMLTDEMKKNIERENGRYAKGRKLLDIITHRGSHAFTALRISLIKAGN FSLAKELQQDLMSLTSETKDESECGESLIWTTILKKTDKKEDKRPKIGKNERRCMINVGDNVFVVAKTYKDDMNIHIRQF DENEDGRLFPTKKGVTFPLKRWVFFESMVSDIAEGLKTYSDLESEQTWHLGGGVYASITPEYPTVNIRHFWQPGDATEPI PTKRGIILNNFRFGKLQKAMGEIKECVPETNDVTPXKTFNPYKYRPKQKGRGWTYKQSYRIPIRPHSEINVQPSVPLVTP VAAVEERVKDEYKKDVQEGNPHINPDRDAMSFLSSDSTEIDQPMELSIFAEPANQVAVEKVYFSEARPISSIESEDTPIE IVVSGSGAEYTDLRKSRLGRDELLSLKQAELFIKETGNLSDAASVSGGNVGLVMRYAYTKKSFIFELEDEETGDMFDVYS KHNDKKKRFQCVKRKKSQTGKGLSVKSKTIGKPPGSSMKKSTKITWLTY |
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