Gene
| Gene Model ID | pfu_aug2.0_2209.1_32094 |
|---|---|
| Locus | scaffold2209.1 : 16426 ... 39085 : - |
| To GenomeBrowser | scaffold2209.1:16426..39085 |
| Genes list of scaffold | scaffold2209.1 |
| Synonym | pfu_aug1.0_25790.1_26269 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2209.1_32094.t1 | 7 | 1 | Lectin_C | 11 | 101 | 4.06377e-44 | 149.5 | 6.4e-11 | 3.2e-07 | 30.9 |
| pfu_aug2.0_2209.1_32094.t1 | 7 | 2 | Lectin_C | 129 | 238 | 4.06377e-44 | 149.5 | 1.1e-13 | 5.6e-10 | 39.8 |
| pfu_aug2.0_2209.1_32094.t1 | 7 | 3 | Lectin_C | 284 | 357 | 4.06377e-44 | 149.5 | 0.063 | 310.0 | 2.0 |
| pfu_aug2.0_2209.1_32094.t1 | 7 | 4 | Lectin_C | 459 | 564 | 4.06377e-44 | 149.5 | 1.5e-16 | 7.7e-13 | 49.0 |
| pfu_aug2.0_2209.1_32094.t1 | 7 | 5 | Lectin_C | 610 | 665 | 4.06377e-44 | 149.5 | 5.1e-09 | 2.5e-05 | 24.8 |
| pfu_aug2.0_2209.1_32094.t1 | 7 | 6 | Lectin_C | 693 | 802 | 4.06377e-44 | 149.5 | 8.7e-13 | 4.3e-09 | 36.9 |
| pfu_aug2.0_2209.1_32094.t1 | 7 | 7 | Lectin_C | 864 | 899 | 4.06377e-44 | 149.5 | 1.3 | 6200.0 | -2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2209.1_32094.t1 | gi|512848859|ref|XP_002939048.2| | 6.0e-16 | |
| pfu_aug2.0_2209.1_32094.t1 | gi|699674461|ref|XP_009885425.1| | PREDICTED: LOW QUALITY PROTEIN: macrophage mannose receptor 1-like [Charadrius vociferus] | 1.0e-15 |
| pfu_aug2.0_2209.1_32094.t1 | gi|542142505|ref|XP_005480356.1| | PREDICTED: macrophage mannose receptor 1-like [Zonotrichia albicollis] | 2.0e-15 |
| pfu_aug2.0_2209.1_32094.t1 | gi|695138843|ref|XP_009511802.1| | PREDICTED: macrophage mannose receptor 1-like, partial [Phalacrocorax carbo] | 7.0e-15 |
| pfu_aug2.0_2209.1_32094.t1 | gi|543253386|ref|XP_005418710.1| | PREDICTED: macrophage mannose receptor 1-like [Geospiza fortis] | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug2.0_2209.1_32094.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2209.1_32094.t1 atgcagtgtaataacgccctaactatgagttccgatatccttatgcctaaatcgatggacatcattaatgacgtcacatc catttggtgtgacaaaatatggataggcttaaatggcacagatgattctgaatccattgacgacttccggtggatcgatg gaacagcccttacctttacaaactggaaagatgaggaagaattcgatgaggaccagctttgcacatccatgcaagattgt ggaaaaacagaatgggaaattgaaaattgttcgcaagaagaatatccgttcgtctgtcaaaagttaaacgtggagaatca atgtcttgcaaattggaccagatcccctagtagtggcatgtgttataatgagatgggcttgggtaactttacagaggcaa tgggtaactgttcatctataaatgcagaaatcgtcatgccaaagactgaagaagaaagcaaaatattaacaaaaatatta gagaatcgccagatagataatatcttcatcggcttggaactggacacctctagacgttcttatcaatggcaagacggtac tccattaagctttactaattgggaaggcgggaactatgaattttggcatttcgtggcctggcacattgatgcctgcgttt ctatgtctaaatcatgggattacagttggtatgacagcatttactgcaatctatcgaatactattatgtgtcaatgcaga ttacaagtcatggactttccacgaaatccgaactatgtgtattgcacagatacgttagaatctagtacagaaacattcgg agaaagtagccacacagtccaaaatactgaaacatcatccaaagtgagcaaatcttctctaaatcagatcaatacaagtg aaaactcaacattgctcttaaaaatccttgcatacagtggaaatacaaatccaacatggagtacccatacaaagaccgag ttacagtggaaccaggactcgtttgaaagtatttcggcgttcggacagaaaacaagggaaactacaacatttgtatgggg gcaaaataccaccgtaacaagagaatgtttcgaaggttgtaattgtaatgagagaccgactgaaagtgaattggctcata aacttgcaaacatgagatcaaatctgacgatagataaagcaaacttgtcgtcaacaattcgaaaattaacatgcgctgac gatcagagggcaagtagcagaattatgggatatgtaggtggcgctgttgtagttatcgtcatcagtttcctagttttcat agatttactttctctgtggaagttgtttataggagaaagcgtctatttccacttcattacgaatcatattagtaggatga ttttcagagaccaaaaacagaatttttccaacgctgtagccgagtgcgaatctttttcagccgatatccttatgcctaaa tcgattgacatcatcaatgacgtcacatccatttgttctgaaaagatatggataggcttaaatggtgctgatgattctga attcttgggcgacttccggtgggtcgatgggacagctcttaactatacaaattggaaagatggggaagaattcgacgaag aaaaactgtgtgcttttatgaacgatagtcagcatacagaatgggaagtagataagtgtagtcataaagaatatccgttc gtctgtcaaaagctaaacgtggaggaccagtgtctgacaaattggacgagatctccaaacagtgacgtttgttaccatga gatgggattgggtacattttcattggcaacggacganggcttaaatggtgctgatgattctgaattcttgggcgacttcc ggtgggtcgatgggacagctcttaactatacaaattggaaagatggggaagaattcgacgaagaaaaactgtgtgctttt atgaacgatagtcagcatacagaatgggaagtagataagtgtagtcataaagaatatccgttcgtctgtcaaaagctaaa cgtggaggaccagtgtctgacaaattggacgagatctccaaacagtgacgtttgttaccatgagatgggattgggtacat tttcattggcaacggacgactgttcttctataaatgcggaaatagtcatgccaaaaacagaagaagaaaacataatcttg gccaaaattttagagaatcgccaaataagtgatatctacattggtttggaactggactccactagacgttcttttcgatg gcaagacggtactgctttaagctttactaattgggatgacgggaaccatgaatattggtatggcgtagcctcctacatta gtacctgcgtttctatgtctaaatcaaggaatttcagttggtatgacagcattaactgctttgatcagaataccataatg tgtcaatgcaaattaccaatcaaggacatcccaccaaatccgaattttgtctattgtatcgatatgttagaatctactag tacagaaagtaacggagaaagtagccacacagtccaaagtactgaatcactatacaaagtaagcatacctactccagatc agacaaatgcaagtgaaaactcaacattgctgttgaatatccttgcatacaatggaaatacaaattcatcatggagtatc catacaagtaccgagttaccctggaacgaaaaatcatttgaaagtacttcggcatttggacagaaaaccagggaaagtac atcattactagggggacaaaagaccaccgtaacaagagaatgtttcgaaagttgtaattgcaatgagagtccgactgaaa acgaactggccattaaacttgcaaatcttagatcaaatctgacaatagataaggcaaacttgtcgtcaacaattcgaaaa ttaacatgcgctgacgatcagagggcaagtagcagaattatgggatatctaggtggatttgttgtagttatcgtcgtcag tttcctgatgtttttggatttactgtctctgtag |
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Protein
| Protein ID | pfu_aug2.0_2209.1_32094.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2209.1_32094.t1 MQCNNALTMSSDILMPKSMDIINDVTSIWCDKIWIGLNGTDDSESIDDFRWIDGTALTFTNWKDEEEFDEDQLCTSMQDC GKTEWEIENCSQEEYPFVCQKLNVENQCLANWTRSPSSGMCYNEMGLGNFTEAMGNCSSINAEIVMPKTEEESKILTKIL ENRQIDNIFIGLELDTSRRSYQWQDGTPLSFTNWEGGNYEFWHFVAWHIDACVSMSKSWDYSWYDSIYCNLSNTIMCQCR LQVMDFPRNPNYVYCTDTLESSTETFGESSHTVQNTETSSKVSKSSLNQINTSENSTLLLKILAYSGNTNPTWSTHTKTE LQWNQDSFESISAFGQKTRETTTFVWGQNTTVTRECFEGCNCNERPTESELAHKLANMRSNLTIDKANLSSTIRKLTCAD DQRASSRIMGYVGGAVVVIVISFLVFIDLLSLWKLFIGESVYFHFITNHISRMIFRDQKQNFSNAVAECESFSADILMPK SIDIINDVTSICSEKIWIGLNGADDSEFLGDFRWVDGTALNYTNWKDGEEFDEEKLCAFMNDSQHTEWEVDKCSHKEYPF VCQKLNVEDQCLTNWTRSPNSDVCYHEMGLGTFSLATDXGLNGADDSEFLGDFRWVDGTALNYTNWKDGEEFDEEKLCAF MNDSQHTEWEVDKCSHKEYPFVCQKLNVEDQCLTNWTRSPNSDVCYHEMGLGTFSLATDDCSSINAEIVMPKTEEENIIL AKILENRQISDIYIGLELDSTRRSFRWQDGTALSFTNWDDGNHEYWYGVASYISTCVSMSKSRNFSWYDSINCFDQNTIM CQCKLPIKDIPPNPNFVYCIDMLESTSTESNGESSHTVQSTESLYKVSIPTPDQTNASENSTLLLNILAYNGNTNSSWSI HTSTELPWNEKSFESTSAFGQKTRESTSLLGGQKTTVTRECFESCNCNESPTENELAIKLANLRSNLTIDKANLSSTIRK LTCADDQRASSRIMGYLGGFVVVIVVSFLMFLDLLSL |
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