Gene
| Gene Model ID | pfu_aug2.0_2209.1_32095 |
|---|---|
| Locus | scaffold2209.1 : 54816 ... 65660 : + |
| To GenomeBrowser | scaffold2209.1:54816..65660 |
| Genes list of scaffold | scaffold2209.1 |
| Synonym | pfu_aug1.0_78628.1_49214 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2209.1_32095.t1 | 3 | 1 | PDZ | 20 | 88 | 5.8e-30 | 103.3 | 1.2e-15 | 2.5e-12 | 46.7 |
| pfu_aug2.0_2209.1_32095.t1 | 3 | 1 | PDZ_2 | 29 | 96 | 2.8e-17 | 62.3 | 3.3e-11 | 7.1e-08 | 32.2 |
| pfu_aug2.0_2209.1_32095.t1 | 1 | 1 | Trypan_PARP | 120 | 187 | 1.5e-06 | 28.0 | 1.6e-09 | 3.4e-06 | 26.9 |
| pfu_aug2.0_2209.1_32095.t1 | 3 | 2 | PDZ_2 | 192 | 210 | 2.8e-17 | 62.3 | 1.3 | 2700.0 | -1.7 |
| pfu_aug2.0_2209.1_32095.t1 | 3 | 2 | PDZ | 225 | 293 | 5.8e-30 | 103.3 | 2.4e-18 | 5.1e-15 | 55.4 |
| pfu_aug2.0_2209.1_32095.t1 | 3 | 3 | PDZ_2 | 234 | 281 | 2.8e-17 | 62.3 | 3.7e-10 | 7.8e-07 | 28.8 |
| pfu_aug2.0_2209.1_32095.t1 | 3 | 3 | PDZ | 304 | 315 | 5.8e-30 | 103.3 | 5.8 | 12000.0 | -3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2209.1_32095.t1 | gi|524880101|ref|XP_005096718.1| | PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2209.1_32095.t1 | gi|391336261|ref|XP_003742500.1| | PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF3-like [Metaseiulus occidentalis] | 0.0 |
| pfu_aug2.0_2209.1_32095.t1 | gi|213982723|ref|NP_001135534.1| | Na(+)/H(+) exchange regulatory cofactor NHE-RF2 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_2209.1_32095.t1 | gi|148227378|ref|NP_001083715.1| | solute carrier family 9, subfamily A (NHE3, cation proton antiporter 3), member 3 regulator 2 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_2209.1_32095.t1 | gi|742111047|ref|XP_010872313.1| | PREDICTED: Na(+)/H(+) exchange regulatory cofactor NHE-RF2 [Esox lucius] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2209.1_32095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2209.1_32095.t1 atgggtgagaacgagaacaagccgagattgtgtcacctagtcaaatggcctgattttcagggatatggatttaatttaca cgcagaaagggggaaagcaggacagtttataggaaaagttgacgatggttcacccgccctggccgccggattgaaagatg gtgacagaatagtcgagatcaatggtataaatatcggtaacgagaatcatcagcaagtcgttgggcggatcaaggcggga ggtgacgaggtcactattttggtggtggattcagaaacggacaaatattacaaagatatgaagcaaatagttcgtaatga cctccccgaagtagttaaaatgagtgccgccagggaacaacaaaatggggaggataatccagataatcagccagaatccg agccaccaagtgaaccatcagaacctgaacccccgagagagccatcaccagaacctgagcctgagcgtgaaccagagccc gaacctgagccagaaccagcaaaggaagaagagcgtcttcctgagccagaaccggaacaagtgagcactcaggaagatac accggcagttgaagaaattgtagtaaatgccaatggagttaatgtagaagaagatgatgaatcaagccggtatattcctc gattgtgtcatgttacaaagtggccagattttcaaggctatggtttcaatttacatgcagagagagacaaaccaggacaa tatattggtaatattgattcagactctccggctgaagaagctgggttaaggaaaggagataggattatagaaattaatgg tgtaaatattgaaaatgaatcgcaccaacaggtgatacagagggtgaaagcggttccaaatgagacgaccatgcttttat tggatgacgcagccgacaaatattacaaagataaaggaatcacggtcaatagcagcatgcctaatgtgatgaaattggaa aataagcccagaggaaatgcgccgatgaatacaacatctgacgattttctcctgtga |
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Protein
| Protein ID | pfu_aug2.0_2209.1_32095.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2209.1_32095.t1 MGENENKPRLCHLVKWPDFQGYGFNLHAERGKAGQFIGKVDDGSPALAAGLKDGDRIVEINGINIGNENHQQVVGRIKAG GDEVTILVVDSETDKYYKDMKQIVRNDLPEVVKMSAAREQQNGEDNPDNQPESEPPSEPSEPEPPREPSPEPEPEREPEP EPEPEPAKEEERLPEPEPEQVSTQEDTPAVEEIVVNANGVNVEEDDESSRYIPRLCHVTKWPDFQGYGFNLHAERDKPGQ YIGNIDSDSPAEEAGLRKGDRIIEINGVNIENESHQQVIQRVKAVPNETTMLLLDDAADKYYKDKGITVNSSMPNVMKLE NKPRGNAPMNTTSDDFLL |
|