Gene
| Gene Model ID | pfu_aug2.0_2209.1_32096 |
|---|---|
| Locus | scaffold2209.1 : 78795 ... 107055 : - |
| To GenomeBrowser | scaffold2209.1:78795..107055 |
| Genes list of scaffold | scaffold2209.1 |
| Synonym | pfu_aug1.0_27640.1_04591 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2209.1_32096.t1 | 1 | 1 | CNH | 203 | 370 | 8.7e-17 | 61.4 | 6.5e-20 | 1.6e-16 | 60.5 |
| pfu_aug2.0_2209.1_32096.t1 | 2 | 1 | Vps39_1 | 411 | 453 | 9.2e-21 | 73.8 | 1.1 | 2600.0 | -1.6 |
| pfu_aug2.0_2209.1_32096.t1 | 2 | 1 | Clathrin | 515 | 642 | 5.5e-13 | 48.7 | 9.4e-12 | 2.3e-08 | 33.7 |
| pfu_aug2.0_2209.1_32096.t1 | 2 | 2 | Vps39_1 | 536 | 637 | 9.2e-21 | 73.8 | 3.7e-24 | 9.2e-21 | 73.8 |
| pfu_aug2.0_2209.1_32096.t1 | 2 | 2 | Clathrin | 666 | 765 | 5.5e-13 | 48.7 | 7.4e-07 | 0.0018 | 17.8 |
| pfu_aug2.0_2209.1_32096.t1 | 2 | 1 | Vps39_2 | 696 | 756 | 1.1e-27 | 96.3 | 0.23 | 580.0 | 0.7 |
| pfu_aug2.0_2209.1_32096.t1 | 2 | 2 | Vps39_2 | 796 | 903 | 1.1e-27 | 96.3 | 7.4e-31 | 1.8e-27 | 95.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2209.1_32096.t1 | gi|676426333|ref|XP_009044590.1| | hypothetical protein LOTGIDRAFT_135703 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2209.1_32096.t1 | gi|524900368|ref|XP_005106604.1| | PREDICTED: transforming growth factor-beta receptor-associated protein 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2209.1_32096.t1 | gi|261289817|ref|XP_002611770.1| | hypothetical protein BRAFLDRAFT_268910 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_2209.1_32096.t1 | gi|632939828|ref|XP_007883285.1| | PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_2209.1_32096.t1 | gi|564252217|ref|XP_006265143.1| | PREDICTED: transforming growth factor-beta receptor-associated protein 1 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2209.1_32096.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2209.1_32096.t1 atggacttaccaggaactttgaaagaaatccataataaagtcagaagtgatttttgttttgattatcttgatccccaaag taactcgggacggaattttaggatctttaaaggaaactgtcatattcatttggacaatgttgagagaacatatgatgtgc cagaacttatatttgatgctttagagagaaagggaaagttaggaccgggtaattataacttactgaaggacttaatacga aatgttgatatgaagatgttggagtatctacaggctgctgaggaaaggataggggaaatcagccagattaatgatgttgg cgggagggggtccaaggagcaggaagaaaccggagtacccggagaaaaaacccctgcagaggcctgggtgggggaccacc taccctcccacataagaccctttgccgaatctgagattcgatcccgggaccttagagcaaaactgctgcagtttgcacat cttttgaatgatacattctttgtcgtacattacacagtagaggagagggcatcagcttcaggcaaagtcacatttcacaa tgagaagcagggacataaatacttggcagtgcctgttgtcagtggagctaaaatcaaaggagtgacttgtttttgtttga atgaaaatcctctcaatggaaatccatttagtgtagaaatttgtgtggctttaaggaagaaacagttacagctttattcg gtcacggaggacagattagctcacatacgagatgtccatatctctgaacctgccattgcactgagtttagacagtacatt catatgtgcagcgttggcgtcacagtattgtatgatagactttgattcaggaaatacccaggatctgttcccttatgacg gtgaaaataataaaccactcatcaaacgtattagcaaggaggagtttttgttgagtggaccaagtgcattaggaatgttt gtaacttccgcaggcgtatcccagcgacctccgttacagtggtcagaaaatctggtcagcatcagctatgtacatcctta tatcattgccatgaacgatgaattcatcacaattcacagtattttagatcagcaacagaagcaagcaatactatttcagg gcggcacatttatggagaattttgatggtcgattgtttgtagcatcaggaagagaaatctactgcttagtacctgttgca tgggaaaaacaggttcaagcgttacttcaggataagcgggtcactgaggcattagaattggcaaaaaatgccaataaaac gggcagcaaagacaagtacctaaagatctataagagattacagcaacaggcagcgtttatagagttttctcagcaacact ttgaggaagctgaagatttatttaaagctggccagttggatgttagagaagtaatatgtttatatcccaagctgatgcca agcaactctaccttcactagatctgtaccacctctccatgaaatagccgatattcatcagctgacgcggggaaacgataa cttgataaaggagtataaaacgtttttacaacaatatttagaggatataaaaggcagcaaggagggagtgggctttaaac aagaaattgatacagctttattgaagttatatgctgagatgaattcaccagagttgattcctttgattgctgtagataca ggttgtgatttaaaagactgtgttgagtggttggacaaatttcatcgttatcatgcgctagcgttactttataaatatca ttcagatcacgacaaggcattaaatatatggcaaagattagttaacaaggagatagaagatgaagtatttcctggcttga attttgtgatagaatatttatctaatttaaatgaccatgaattagtatggaaatatatagactgggttcttactaaagat ccagaaaatggtgtcaaaatatttacggagagacctcagaatgaactaccgtcagagcgacttcgaccagaaactgtgat cgattacttacatagattccctaaagctgtgatatcatacctcgagtatctggtttttcagaaaaagttagagaaagaga aataccacacccatctagcagtactttacctagacactgtgctgaaactcatgaaggattcctcgtctaggaaagaggaa gtagatgtagcaaggtcaaagctacgtcacatgcttcagatgtcagcattatacagagtccagctgattctaggaaaggc caaagaaatggacatgcatgctgaatgtgctatactctatggaaaagggaaagatcctctgtaccgtaaacatctcttcc acatactactcagtgtatatctagatccctcacacgagcataaagatcaacttgttagacctgctgtagaactgctcaat agtaacattgctgattttgacacgattaaggttcttcagtcacttccagaaaactggtcagtgagtctgctatcacaatt tttaacccagacagtgcgtaaaagcatgaacttaagtcggaatacacggatagagagaatgatgtccagaggagagaacc tacaagtcaaacagaactgtatagagagagaaagggagtatgtcacaatgaatgatgataggttatgtgccgtgtgtagc agggctttcagtgatcctacttttgtgcgctatccaaacggtgttgtgactcatgttcactgtgcacgaagcaaacacat ttgtcctgtaacgggaaaactcttcagtacaaaaaagtcctga |
|
Protein
| Protein ID | pfu_aug2.0_2209.1_32096.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2209.1_32096.t1 MDLPGTLKEIHNKVRSDFCFDYLDPQSNSGRNFRIFKGNCHIHLDNVERTYDVPELIFDALERKGKLGPGNYNLLKDLIR NVDMKMLEYLQAAEERIGEISQINDVGGRGSKEQEETGVPGEKTPAEAWVGDHLPSHIRPFAESEIRSRDLRAKLLQFAH LLNDTFFVVHYTVEERASASGKVTFHNEKQGHKYLAVPVVSGAKIKGVTCFCLNENPLNGNPFSVEICVALRKKQLQLYS VTEDRLAHIRDVHISEPAIALSLDSTFICAALASQYCMIDFDSGNTQDLFPYDGENNKPLIKRISKEEFLLSGPSALGMF VTSAGVSQRPPLQWSENLVSISYVHPYIIAMNDEFITIHSILDQQQKQAILFQGGTFMENFDGRLFVASGREIYCLVPVA WEKQVQALLQDKRVTEALELAKNANKTGSKDKYLKIYKRLQQQAAFIEFSQQHFEEAEDLFKAGQLDVREVICLYPKLMP SNSTFTRSVPPLHEIADIHQLTRGNDNLIKEYKTFLQQYLEDIKGSKEGVGFKQEIDTALLKLYAEMNSPELIPLIAVDT GCDLKDCVEWLDKFHRYHALALLYKYHSDHDKALNIWQRLVNKEIEDEVFPGLNFVIEYLSNLNDHELVWKYIDWVLTKD PENGVKIFTERPQNELPSERLRPETVIDYLHRFPKAVISYLEYLVFQKKLEKEKYHTHLAVLYLDTVLKLMKDSSSRKEE VDVARSKLRHMLQMSALYRVQLILGKAKEMDMHAECAILYGKGKDPLYRKHLFHILLSVYLDPSHEHKDQLVRPAVELLN SNIADFDTIKVLQSLPENWSVSLLSQFLTQTVRKSMNLSRNTRIERMMSRGENLQVKQNCIEREREYVTMNDDRLCAVCS RAFSDPTFVRYPNGVVTHVHCARSKHICPVTGKLFSTKKS |
|