Gene
| Gene Model ID | pfu_aug2.0_221.1_03812 |
|---|---|
| Locus | scaffold221.1 : 7888 ... 38505 : - |
| To GenomeBrowser | scaffold221.1:7888..38505 |
| Genes list of scaffold | scaffold221.1 |
| Synonym | pfu_aug1.0_6899.1_38427 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase i subunit rpa2 isoform x1 | GO:0005634 GO:0009987 GO:0016740 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_221.1_03812.t1 | 1 | 1 | RNA_pol_Rpb2_1 | 26 | 340 | 7.5e-30 | 103.3 | 2.4e-31 | 5.9e-28 | 97.1 |
| pfu_aug2.0_221.1_03812.t1 | 1 | 1 | RNA_pol_Rpb2_3 | 359 | 422 | 8.0e-25 | 86.3 | 1.0e-27 | 2.5e-24 | 84.7 |
| pfu_aug2.0_221.1_03812.t1 | 1 | 1 | RNA_pol_Rpa2_4 | 481 | 545 | 1.8e-13 | 50.2 | 2.0e-16 | 4.9e-13 | 48.8 |
| pfu_aug2.0_221.1_03812.t1 | 2 | 1 | RNA_pol_Rpb2_6 | 593 | 745 | 0.0 | 472.7 | 1.5e-36 | 3.8e-33 | 114.7 |
| pfu_aug2.0_221.1_03812.t1 | 2 | 2 | RNA_pol_Rpb2_6 | 742 | 1087 | 0.0 | 472.7 | 0.0 | 0.0 | 359.9 |
| pfu_aug2.0_221.1_03812.t1 | 1 | 1 | RNA_pol_Rpb2_7 | 1089 | 1193 | 4.5e-20 | 71.6 | 5.7e-23 | 1.4e-19 | 70.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_221.1_03812.t1 | gi|260809401|ref|XP_002599494.1| | hypothetical protein BRAFLDRAFT_223894 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_221.1_03812.t1 | gi|291244544|ref|XP_002742157.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_221.1_03812.t1 | gi|524883280|ref|XP_005098273.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_221.1_03812.t1 | gi|734611033|ref|XP_010732900.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_221.1_03812.t1 | gi|641736754|ref|XP_008159011.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform X1 [Eptesicus fuscus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_221.1_03812.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03812.t1 atgcccctacaagaactaaccaagcctcatattgagtcatttaatttcatgctacacgagggccttaataaagctgtaca gcatgccagcatcgccaaaccagccgtggcatctaccaatagatttgctacaactctcaaagtttatcctgcagagtgta gagagagagggatttcgtacaagggacgactacagatcagcatgatgtggaaacttaacggacaaatacaggacacgatc gataaagttataggagaggtacccataatggtcaagtctgaagcctgtaacattaacaaattacctccagctgagctgat agataaaggggaggaagctgaggagatgggaggctactttatatgtaacgggaatgagaaagttatcagaatgcttatac tacagaggagaaattacccaatgtgcatgacaagaccttcgtggaaaaataggggtagccagtacacagaatatggtgtg tctatgagatgtgtcaggcctgatcaaacaggcacaagtttacaaaatgtgtcggataagtacatatttgatcagctggt cagaggaaaagaagatgactcattctacaagggatgtgtagtggccatgttacgacagctattaccagataaattaacat cacagagtaaagtgttagagtacatcggtaaacggttccaggtcaaaatggggctgcctgaatggtacacacataaagag gtggcattgtttctactgagtcacatgactaggaagttatttgcgtttgctaagggtgagtgtgcggcagagagtgccga caacccaatgttccaagaagtattattaggcggacatttataccttatggttctcaaggagaagatagagaactggttat tatcactgaaggtgtccataataagaacagctagaaccaaagcactacaggaatatcatcttggtaacgcggagttaaat gcagcattgcggcacacgttagatatgacaaagtccatggagtacttgatggccacaggtaacctagtatccaagtctgg tctgggattgatgcagcaaacaggtctgacagtggtagcggacaagttgaattttttccgttacatatcacatttccgat gtgtacacagaggggcgttctttgctgagatgaggacgacgtctgtcagaaaactcctcccagaagcctggggttttcta tgtcctgtccatactccagatggtagtccctgtggtctgttgaaccatatgacagcattatgtcaggcaagtattgttaa acattccactcacacattaactatccacatggcagtgaacaggcagtacaatgtgtcccatttaccgaaacttctctact ctttgggagttattccccttgatggtcagacgacgggatcattgaaggactactacccggtgttactagacggcaggttg ttaggatatctccatgacgatgtggcccaggatgtagaacaaaaactacgggtcatgaaggtcaagggattaaaaaaggt accacctgtagctgaggtaccacctgtagcagagatttgtcttatacccaagtcagagtttgccagccagtacccggctc tgtgtatctttaccaccctggctcggatggtacggcccgtccacaatctacgacttaaaaagattgagtggatagggaca ttcgaacaagtctacatgaacatctgtataactgataaagaggcctatccaggggtgacaagtcacaaggagcttagtga ggtatccatgctgtccaccatagcgtgcctgactccgttttctgaccacaaccaaagtcctaggaacatgtaccagtgtc agatgggtaagcagacaatggggactcctctccacgcctacggtcatagatctgataacaagctgtaccgtatacaaacg ccacaatcacccgttgttaggccggtcttatacgaccattatggtatcgataattatccacttggcaccaacgctatcgt agctgtgatgtcatacacgggctatgatatggaggatgccatgatactaaacaaagcttcctttcagagaggatttggtc acggatcagtatacaagtcagagtttataaatctaaaagaaaagtcacgggagaggagatcgtcagcgtctaccttgata ttttcctgtaagccgtccagtccccacataaagtcaggaaagctggacatggatggtctaccacctatgggtaagcagac gatggggacacctctccacgcctacggccatagatctgataacaagttgtaccgtatacaaacgccacaatcacctgtcg ttaggccggtcttatatgaccattatggtatcgataattatccactgggcaccaacgctatcgtagctgtgatgtcttac acgggttatgatatggaggacgccatgatactaaacaaagcttcctttcagagaggatttggtcacggatcagtatacaa gtcagagtttataaatcttaaagaaaagtcacgggagaggagatcaacagcgtctaccttgatattttcctgtaagctgt ccagtccccacataaagtcaggaaagctggacacggatggactaccacctgtaggcacattcttacagactggggatcct tactacagttatgtaaacatacaaaccggagaagagaaagtagagaaatataaacaccaggaacctgcttatgtggacag tatcaaaattctcagtgatgatcaggggacaggggacctctcaaaagtctgttttgttctgagagttcagaggaatccta ttatcggagataaattttctagtagacacggacagaagggaatctgtagtatgttatggccagtagagagtatgccttac tctgagagtggaatgacaccagacataatatttaatcctcatggattcccatctagaatgaccataggtatgatgataga gagtatggcaggtaagtctgccgcgctacatggtttatgtcacgatgctacaccgtttagcttctctgaggaccagcccg ctattgattactttggtcagatgctcactaaagctggttacaattactttggtacggagcgtatgtacagcggggttaac ggcagggagctggaggcagacatatttataggggtcgtttattaccagaggctgagacacatggtatcggataaatttca ggtgaggacaacaggccctatagatcaggtgacacatcagccgataaagggacgtaaacgaggcgggggtatcagatttg gagagatggaaagagatggtttaatatcacacggcacaaccttcctactacaagatcgactactcaattgctcagattcc tcattggctcatgtatgtacagagtgtggtagtatactgtcacctttactggaaagacctccgtcgtccgtagcagctgt ctccgtggaaacgcagaggaaatggacatgttctgtttgtacccgtagtgatacgatacaattaatcaaagtgccatatg tgttcagatacttgatagcagaactagccgctatgagcataaacgttgaactgaatgttaaaaaagtttga |
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Protein
| Protein ID | pfu_aug2.0_221.1_03812.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03812.t1 MPLQELTKPHIESFNFMLHEGLNKAVQHASIAKPAVASTNRFATTLKVYPAECRERGISYKGRLQISMMWKLNGQIQDTI DKVIGEVPIMVKSEACNINKLPPAELIDKGEEAEEMGGYFICNGNEKVIRMLILQRRNYPMCMTRPSWKNRGSQYTEYGV SMRCVRPDQTGTSLQNVSDKYIFDQLVRGKEDDSFYKGCVVAMLRQLLPDKLTSQSKVLEYIGKRFQVKMGLPEWYTHKE VALFLLSHMTRKLFAFAKGECAAESADNPMFQEVLLGGHLYLMVLKEKIENWLLSLKVSIIRTARTKALQEYHLGNAELN AALRHTLDMTKSMEYLMATGNLVSKSGLGLMQQTGLTVVADKLNFFRYISHFRCVHRGAFFAEMRTTSVRKLLPEAWGFL CPVHTPDGSPCGLLNHMTALCQASIVKHSTHTLTIHMAVNRQYNVSHLPKLLYSLGVIPLDGQTTGSLKDYYPVLLDGRL LGYLHDDVAQDVEQKLRVMKVKGLKKVPPVAEVPPVAEICLIPKSEFASQYPALCIFTTLARMVRPVHNLRLKKIEWIGT FEQVYMNICITDKEAYPGVTSHKELSEVSMLSTIACLTPFSDHNQSPRNMYQCQMGKQTMGTPLHAYGHRSDNKLYRIQT PQSPVVRPVLYDHYGIDNYPLGTNAIVAVMSYTGYDMEDAMILNKASFQRGFGHGSVYKSEFINLKEKSRERRSSASTLI FSCKPSSPHIKSGKLDMDGLPPMGKQTMGTPLHAYGHRSDNKLYRIQTPQSPVVRPVLYDHYGIDNYPLGTNAIVAVMSY TGYDMEDAMILNKASFQRGFGHGSVYKSEFINLKEKSRERRSTASTLIFSCKLSSPHIKSGKLDTDGLPPVGTFLQTGDP YYSYVNIQTGEEKVEKYKHQEPAYVDSIKILSDDQGTGDLSKVCFVLRVQRNPIIGDKFSSRHGQKGICSMLWPVESMPY SESGMTPDIIFNPHGFPSRMTIGMMIESMAGKSAALHGLCHDATPFSFSEDQPAIDYFGQMLTKAGYNYFGTERMYSGVN GRELEADIFIGVVYYQRLRHMVSDKFQVRTTGPIDQVTHQPIKGRKRGGGIRFGEMERDGLISHGTTFLLQDRLLNCSDS SLAHVCTECGSILSPLLERPPSSVAAVSVETQRKWTCSVCTRSDTIQLIKVPYVFRYLIAELAAMSINVELNVKKV |
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