Gene
| Gene Model ID | pfu_aug2.0_221.1_03813 |
|---|---|
| Locus | scaffold221.1 : 65292 ... 71495 : - |
| To GenomeBrowser | scaffold221.1:65292..71495 |
| Genes list of scaffold | scaffold221.1 |
| Synonym | pfu_aug1.0_1464.1_00727 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_221.1_03813.t1 | 3 | 1 | LRR_8 | 7 | 50 | 2.2e-12 | 46.5 | 3.7e-08 | 6.9e-05 | 22.5 |
| pfu_aug2.0_221.1_03813.t1 | 3 | 1 | LRR_4 | 11 | 31 | 1.4e-08 | 34.1 | 5.9e-06 | 0.011 | 15.3 |
| pfu_aug2.0_221.1_03813.t1 | 3 | 2 | LRR_4 | 16 | 50 | 1.4e-08 | 34.1 | 9.5e-07 | 0.0018 | 17.8 |
| pfu_aug2.0_221.1_03813.t1 | 4 | 1 | LRR_1 | 17 | 30 | 2.9e-06 | 26.5 | 5.0e-05 | 0.092 | 12.8 |
| pfu_aug2.0_221.1_03813.t1 | 3 | 2 | LRR_8 | 58 | 96 | 2.2e-12 | 46.5 | 0.00044 | 0.81 | 9.4 |
| pfu_aug2.0_221.1_03813.t1 | 3 | 3 | LRR_4 | 68 | 129 | 1.4e-08 | 34.1 | 9.4e-06 | 0.017 | 14.6 |
| pfu_aug2.0_221.1_03813.t1 | 4 | 2 | LRR_1 | 70 | 88 | 2.9e-06 | 26.5 | 0.12 | 230.0 | 2.5 |
| pfu_aug2.0_221.1_03813.t1 | 3 | 3 | LRR_8 | 92 | 127 | 2.2e-12 | 46.5 | 2.6e-06 | 0.0048 | 16.6 |
| pfu_aug2.0_221.1_03813.t1 | 4 | 3 | LRR_1 | 95 | 112 | 2.9e-06 | 26.5 | 0.55 | 1000.0 | 0.5 |
| pfu_aug2.0_221.1_03813.t1 | 4 | 4 | LRR_1 | 118 | 131 | 2.9e-06 | 26.5 | 0.00032 | 0.6 | 10.3 |
| pfu_aug2.0_221.1_03813.t1 | 1 | 1 | TIR | 239 | 372 | 1.4e-20 | 73.1 | 1.1e-23 | 2.0e-20 | 72.6 |
| pfu_aug2.0_221.1_03813.t1 | 2 | 1 | TIR_2 | 240 | 335 | 1.4e-09 | 37.9 | 1.8e-12 | 3.2e-09 | 36.8 |
| pfu_aug2.0_221.1_03813.t1 | 2 | 2 | TIR_2 | 343 | 358 | 1.4e-09 | 37.9 | 3.3 | 6200.0 | -2.6 |
Transcript
| Transcript ID | pfu_aug2.0_221.1_03813.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03813.t1 atgatgccaactatcatgctcagtcatgcaactctaagggcctgtaaaaacctagaatatcttgatttatctcataatca tcttccaaaatggactgaggacgtaagatttctcctagagggtttaacacatctacgctatttgatcttgattgaagtat attggtcactaattcctgaccactttttcacattcatcccaaatgttattgaagtgcaactgtccgaaaatcgcatacgt agtttaaaccagagtttattttcgaaagactcaaggatatcaagattgaccctagacgtgaacagaataacgtatgttgg accgaacacttttcctcagtcactttggaactcattgaagtctctggatttgagtggaaacccttttgtttgcagctgtg atcttctgtggtttagacattttcttgacaaaactaccatcagattcaatcaatacccatccaactatcactgtagttca ccgcctgagaagaaaggccttccactacaggctttccatcttcgggaagagaactgtcaggcacccagtaaccttttaac cattcttttgtgctctggttctgttggattgttcctgctgatagtaactcttatcctgtacaaggcaaggtggcaaatac gatattggttatacctgcttagatacagaaggtctgagtatacccgtattagtgatgtaagtttcaagtacgatgcattc atcatctatgctgacgaaaacagtgactttgtccatgatgtgctactcaggaaactagaggtcgagcacgggttttcttt gtgtattcacttcagagattttcaaattggaagaataatagtcgacaatatcgtggaatgtatgtcagaatgtcgcaatg tcctggttatactctctgaaggtttatgtcagagtaaatggtgtaagtttgaattagacgtagcccaagaccgctggctt aataatgagacggaagcattatttgttataatgatgggtgaagtgaacagtcggtatatgaccaaatacatacatgcctt gttgaagacaaccacctatgcagtgtggactgagaatgaagatggaaacgacctattttggaaaaagctcatttctgcaa tgaaaattgaggagagttga |
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Protein
| Protein ID | pfu_aug2.0_221.1_03813.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03813.t1 MMPTIMLSHATLRACKNLEYLDLSHNHLPKWTEDVRFLLEGLTHLRYLILIEVYWSLIPDHFFTFIPNVIEVQLSENRIR SLNQSLFSKDSRISRLTLDVNRITYVGPNTFPQSLWNSLKSLDLSGNPFVCSCDLLWFRHFLDKTTIRFNQYPSNYHCSS PPEKKGLPLQAFHLREENCQAPSNLLTILLCSGSVGLFLLIVTLILYKARWQIRYWLYLLRYRRSEYTRISDVSFKYDAF IIYADENSDFVHDVLLRKLEVEHGFSLCIHFRDFQIGRIIVDNIVECMSECRNVLVILSEGLCQSKWCKFELDVAQDRWL NNETEALFVIMMGEVNSRYMTKYIHALLKTTTYAVWTENEDGNDLFWKKLISAMKIEES |
|