Gene
| Gene Model ID | pfu_aug2.0_221.1_03816 |
|---|---|
| Locus | scaffold221.1 : 102190 ... 104255 : - |
| To GenomeBrowser | scaffold221.1:102190..104255 |
| Genes list of scaffold | scaffold221.1 |
| Synonym | pfu_aug1.0_1464.1_00723 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| toll-like receptor 2 type 1 | GO:0002224 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_221.1_03816.t1 | 4 | 1 | LRR_8 | 7 | 56 | 5.6e-12 | 45.2 | 9.5e-06 | 0.016 | 14.9 |
| pfu_aug2.0_221.1_03816.t1 | 4 | 2 | LRR_8 | 16 | 80 | 5.6e-12 | 45.2 | 1.1e-06 | 0.0018 | 17.9 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 1 | LRR_4 | 16 | 56 | 1.4e-11 | 43.7 | 6.1e-06 | 0.01 | 15.4 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 1 | LRR_1 | 17 | 38 | 6.5e-09 | 34.6 | 0.02 | 33.0 | 5.0 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 2 | LRR_4 | 45 | 81 | 1.4e-11 | 43.7 | 8.7e-05 | 0.14 | 11.7 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 2 | LRR_1 | 46 | 64 | 6.5e-09 | 34.6 | 0.00054 | 0.9 | 9.8 |
| pfu_aug2.0_221.1_03816.t1 | 4 | 3 | LRR_8 | 74 | 131 | 5.6e-12 | 45.2 | 1.0e-07 | 0.00017 | 21.3 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 3 | LRR_4 | 86 | 112 | 1.4e-11 | 43.7 | 0.00065 | 1.1 | 8.9 |
| pfu_aug2.0_221.1_03816.t1 | 4 | 4 | LRR_8 | 96 | 140 | 5.6e-12 | 45.2 | 6.6e-08 | 0.00011 | 21.8 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 4 | LRR_4 | 96 | 137 | 1.4e-11 | 43.7 | 6.0e-08 | 9.9e-05 | 21.8 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 3 | LRR_1 | 98 | 116 | 6.5e-09 | 34.6 | 0.046 | 76.0 | 3.9 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 5 | LRR_4 | 121 | 159 | 1.4e-11 | 43.7 | 1.9e-05 | 0.031 | 13.8 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 4 | LRR_1 | 121 | 142 | 6.5e-09 | 34.6 | 0.00071 | 1.2 | 9.4 |
| pfu_aug2.0_221.1_03816.t1 | 5 | 5 | LRR_1 | 149 | 157 | 6.5e-09 | 34.6 | 0.23 | 390.0 | 1.8 |
| pfu_aug2.0_221.1_03816.t1 | 1 | 1 | TIR | 270 | 403 | 1.4e-24 | 86.1 | 1.4e-27 | 2.2e-24 | 85.4 |
| pfu_aug2.0_221.1_03816.t1 | 1 | 1 | TIR_2 | 270 | 370 | 1.9e-13 | 50.4 | 2.4e-16 | 3.9e-13 | 49.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_221.1_03816.t1 | gi|734602033|ref|XP_010727952.1| | PREDICTED: toll-like receptor 1 [Larimichthys crocea] | 1.4013e-45 |
| pfu_aug2.0_221.1_03816.t1 | gi|690457884|ref|XP_009328070.1| | PREDICTED: toll-like receptor 2 type-2 [Pygoscelis adeliae] | 5.00264e-43 |
| pfu_aug2.0_221.1_03816.t1 | gi|675406107|ref|XP_008931404.1| | PREDICTED: toll-like receptor 2 type-1 [Manacus vitellinus] | 8.00141e-43 |
Transcript
| Transcript ID | pfu_aug2.0_221.1_03816.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03816.t1 atgataagaggagtaaaggtcatagaacgaaatgcttttgatattccgtctttgaaaagactctacttcagacgaaataa gttcagttttagcgaaaaaacattgatctattctatttcttttggagcgtgcaaaaatcttgaaatcttggatctatctt acaacagaatgcctacgtcaacagaagttttacataaattactttttggactaaatacactgacacaattgcgtctggag agcgtagaatggaaagctatacccgaagaactatttgaaatgtttccgaacatggagaaagtctggctttctcataacgg aattcataaaattgacagaagcctttttaccgagaaaatgaaattaaaagtgatttatctaaaccacaatggcttctcta gtttgagctctggatcttttccaaaattcttctggaagtctgccgaaagaattgatttatctggaaacccgtacgcttgc aactgtgatctcatgtggttccggaataagttgaacagctctccttcactttttcatgaatatcccaaaaagtacatttg ttcttctccgaaagaatttagaggcatcgaaataagtaagttcaatattactgaggaggactgccgaacagaatcggaac tggtgataacactgtgctcaacaatttcattttttgtcttcgctggcttcattattctttgtttgtacaaagcaagatgg cacatccgctattggatttacctcctacgatttagacgtactggtatcgaaaggaaacatgacgataataatggcttcgc gtttgacgtgtttgtatcatacgccgaggaagatggcgacttcgttcacaatatccttctcaacaaattggaagctgaac acaaatacagattgtgtattcacgctagggattttgaagcaggaagaatgattgtagataacattgcagaaaacatgaca tctagtaggcaagtgttgttagttttatctgagagcttttgcaagagtaaatggtgcaagttggagcaactaatcgcctt ggatcgatggttgaacaatgagtcagagccaatcgtcatgataatgcttgagggaatacacagcaaaaatatgaataaag atatgaggatccttttaagtactaccacttatgtgcagtgggccttgaatgataccggtaaagaagtattttggaatcaa cttctcgcctctcttaagcgataa |
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Protein
| Protein ID | pfu_aug2.0_221.1_03816.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03816.t1 MIRGVKVIERNAFDIPSLKRLYFRRNKFSFSEKTLIYSISFGACKNLEILDLSYNRMPTSTEVLHKLLFGLNTLTQLRLE SVEWKAIPEELFEMFPNMEKVWLSHNGIHKIDRSLFTEKMKLKVIYLNHNGFSSLSSGSFPKFFWKSAERIDLSGNPYAC NCDLMWFRNKLNSSPSLFHEYPKKYICSSPKEFRGIEISKFNITEEDCRTESELVITLCSTISFFVFAGFIILCLYKARW HIRYWIYLLRFRRTGIERKHDDNNGFAFDVFVSYAEEDGDFVHNILLNKLEAEHKYRLCIHARDFEAGRMIVDNIAENMT SSRQVLLVLSESFCKSKWCKLEQLIALDRWLNNESEPIVMIMLEGIHSKNMNKDMRILLSTTTYVQWALNDTGKEVFWNQ LLASLKR |
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