Gene
| Gene Model ID | pfu_aug2.0_221.1_03826 |
|---|---|
| Locus | scaffold221.1 : 237591 ... 259940 : - |
| To GenomeBrowser | scaffold221.1:237591..259940 |
| Genes list of scaffold | scaffold221.1 |
| Synonym | pfu_aug1.0_12198.1_03190 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_221.1_03826.t1 | 1 | 1 | SWIRM | 196 | 283 | 4.9e-07 | 29.7 | 1.1e-09 | 1.3e-06 | 28.4 |
| pfu_aug2.0_221.1_03826.t1 | 2 | 1 | DAO | 305 | 329 | 4.2e-07 | 29.1 | 3.0e-07 | 0.00034 | 19.6 |
| pfu_aug2.0_221.1_03826.t1 | 2 | 1 | Amino_oxidase | 312 | 330 | 0.0 | 236.9 | 8.1e-05 | 0.092 | 11.7 |
| pfu_aug2.0_221.1_03826.t1 | 2 | 2 | Amino_oxidase | 405 | 714 | 0.0 | 236.9 | 0.0 | 0.0 | 223.7 |
| pfu_aug2.0_221.1_03826.t1 | 2 | 2 | DAO | 483 | 523 | 4.2e-07 | 29.1 | 0.0018 | 2.1 | 7.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_221.1_03826.t1 | gi|676459185|ref|XP_009055219.1| | hypothetical protein LOTGIDRAFT_145165, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_221.1_03826.t1 | gi|742109216|ref|XP_010871791.1| | PREDICTED: lysine-specific histone demethylase 1B [Esox lucius] | 0.0 |
| pfu_aug2.0_221.1_03826.t1 | gi|524911011|ref|XP_005110377.1| | PREDICTED: lysine-specific histone demethylase 1B-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_221.1_03826.t1 | gi|542227924|ref|XP_005452898.1| | PREDICTED: lysine-specific histone demethylase 1B [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_221.1_03826.t1 | gi|583998813|ref|XP_006794486.1| | PREDICTED: lysine-specific histone demethylase 1B-like [Neolamprologus brichardi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_221.1_03826.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03826.t1 atggcatcgcccagcaaacgggtgtcaggacgagtccaaaagagaaagatattcgcagatgaaatagagtctacccccac caaagaaccggcactggcgataagtcccgcagccaaagatcctgtaaagagaaggaaatgtgacaatgctgcctgtagag gcaattggccaatatgctttgcatgtgcatcagaaaaatgttgcggtcgtgggtacacatcgagatggtatcatgtgtca ccagcagaacatttctgtaacgagtgttttgaattcttctatcgcagtcataaagaagggtattccacgtatgcggcttg gaagacggtatggagtacttatgagaaatcaaaacaagaagaatactgcaatgcaccggaggatgaaagagtagacttga tccgagagaagatgttactgcgtttcatgtcttgtaccacctatatgaagagttccccagcctggccgtttctcactgca tactttccagacaaacttggaatgagtcccacggattatgaagtatttagtgaaacaaaatctccagtatttcatccata tctccatccattttcctcgtacgatgaaccagaagtagcaggcagtgtccctcctgacagaatggacagtgaagaaatgg cagaattctcagaaatgtgcagcttcattcccatgtatctggccatcagaaatatttgtatcaccttgtggaatctaaat tacaaagaatggttaacaaaggagaaatgtgcacctcatataatatgtagagggatttgtcgagtgtattatataggaat gttagacagatttctacagtatctgacccatagaagactgatcaactatggactattatcctttcccagtcatgtcagct ggaaaccatgtgtggctgacaaggaagtatctgtgatagtggtgggtgcaggtatagctggactatcagcagccagagaa ttactacagagaggtattagggtgaaagtaggtgcccagatgatcagtggttgtaccaataatcctatggctataatgtg tctgcaggcaggcataccggttaaggagatgtcggagaagtgtaatctatttatggaggatggttcaccagtaccggagg acatggacagacggatggacttccattttaatgctatactggataccatagcagagtggagaaaaaataaagaactcagt caagatatcagtctgttatccaagttcaaagagatgcatcagcagtttttggacgaatctcagttaacgtttacacaaga tgaagagaccttgctgaacttttacattggtaatttggagtatgcatgtggaagtagtctgaagtcattgtccagtaaaa actgggatcaaaacgaggaatacccacaattctctgggggaaatatattcctgccaaaaggctttgctaaaatattattg tcactaagtaatgggatggatattgagtataacaaacaggtatctgagattagttatgatggtgactcatgtaggatctg tacagtcgatggaaaaacatatgaagctaataaggtgattgtaactgtaccattgggagtgttaaaggatgaggacatgg ctttcagtccctcgttaccagagtggaaaacaacagctattaaatcacttggctcggggacggtggaaaaggttgtgatg aggttcgagactccattttggcgtgagaaaactcaacatgccgatatatttggtcatgttcccagtgagaattccaaaag agacttcaccgtcttctatgatctatccaaggtagagggtgtgtatgtactgatgacccaccttactgtagactgtgtag aaagcttccgtcagaaatctgatgacgacattgttgcttcttgtgttgatttgctcaaatccttgtttcctgaccagact gtgagtaaaccaagtcagtatattgtgacacgatggtgctgtgatcagtttactaggatgtcctatagttacattcctgt aggagtcagtggagaagcatacgatcatatcgagcaggagttagatgataagctttactttgctggggaggccaccaaca gaaaatacccccagtcagtgttaggagcttacttgagtggtttaagagaagcacagaaaatatacaactcggttggagac tga |
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Protein
| Protein ID | pfu_aug2.0_221.1_03826.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_221.1_03826.t1 MASPSKRVSGRVQKRKIFADEIESTPTKEPALAISPAAKDPVKRRKCDNAACRGNWPICFACASEKCCGRGYTSRWYHVS PAEHFCNECFEFFYRSHKEGYSTYAAWKTVWSTYEKSKQEEYCNAPEDERVDLIREKMLLRFMSCTTYMKSSPAWPFLTA YFPDKLGMSPTDYEVFSETKSPVFHPYLHPFSSYDEPEVAGSVPPDRMDSEEMAEFSEMCSFIPMYLAIRNICITLWNLN YKEWLTKEKCAPHIICRGICRVYYIGMLDRFLQYLTHRRLINYGLLSFPSHVSWKPCVADKEVSVIVVGAGIAGLSAARE LLQRGIRVKVGAQMISGCTNNPMAIMCLQAGIPVKEMSEKCNLFMEDGSPVPEDMDRRMDFHFNAILDTIAEWRKNKELS QDISLLSKFKEMHQQFLDESQLTFTQDEETLLNFYIGNLEYACGSSLKSLSSKNWDQNEEYPQFSGGNIFLPKGFAKILL SLSNGMDIEYNKQVSEISYDGDSCRICTVDGKTYEANKVIVTVPLGVLKDEDMAFSPSLPEWKTTAIKSLGSGTVEKVVM RFETPFWREKTQHADIFGHVPSENSKRDFTVFYDLSKVEGVYVLMTHLTVDCVESFRQKSDDDIVASCVDLLKSLFPDQT VSKPSQYIVTRWCCDQFTRMSYSYIPVGVSGEAYDHIEQELDDKLYFAGEATNRKYPQSVLGAYLSGLREAQKIYNSVGD |
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