Gene
| Gene Model ID | pfu_aug2.0_223.1_10465 |
|---|---|
| Locus | scaffold223.1 : 144358 ... 177905 : - |
| To GenomeBrowser | scaffold223.1:144358..177905 |
| Genes list of scaffold | scaffold223.1 |
| Synonym | pfu_aug1.0_537.1_07550 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| double-stranded rna-specific editase 1 isoform x2 | GO:0003723 GO:0004000 GO:0005634 GO:0016070 GO:0043412 GO:0044763 GO:0048523 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_223.1_10465.t1 | 3 | 1 | dsrm | 27 | 88 | 1.6e-31 | 108.6 | 7.2e-18 | 1.2e-14 | 54.6 |
| pfu_aug2.0_223.1_10465.t1 | 3 | 2 | dsrm | 172 | 230 | 1.6e-31 | 108.6 | 3.1e-17 | 5.0e-14 | 52.6 |
| pfu_aug2.0_223.1_10465.t1 | 1 | 1 | A_deamin | 304 | 625 | 0.0 | 363.2 | 0.0 | 0.0 | 362.6 |
| pfu_aug2.0_223.1_10465.t1 | 3 | 3 | dsrm | 604 | 616 | 1.6e-31 | 108.6 | 8.2 | 14000.0 | -3.3 |
| pfu_aug2.0_223.1_10465.t1 | 2 | 1 | COesterase | 638 | 1144 | 0.0 | 793.5 | 0.0 | 0.0 | 428.9 |
| pfu_aug2.0_223.1_10465.t1 | 2 | 1 | Abhydrolase_3 | 756 | 845 | 3.5e-21 | 75.7 | 2.6e-11 | 4.2e-08 | 33.0 |
| pfu_aug2.0_223.1_10465.t1 | 2 | 1 | Peptidase_S9 | 777 | 871 | 2.1e-09 | 36.8 | 2.3e-07 | 0.00038 | 19.7 |
| pfu_aug2.0_223.1_10465.t1 | 2 | 2 | COesterase | 1193 | 1544 | 0.0 | 793.5 | 0.0 | 0.0 | 362.3 |
| pfu_aug2.0_223.1_10465.t1 | 2 | 2 | Abhydrolase_3 | 1310 | 1399 | 3.5e-21 | 75.7 | 8.6e-14 | 1.4e-10 | 41.0 |
| pfu_aug2.0_223.1_10465.t1 | 2 | 2 | Peptidase_S9 | 1334 | 1427 | 2.1e-09 | 36.8 | 8.7e-06 | 0.014 | 14.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_223.1_10465.t1 | gi|676481756|ref|XP_009062483.1| | hypothetical protein LOTGIDRAFT_128560 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_223.1_10465.t1 | gi|562883945|ref|XP_006169472.1| | PREDICTED: double-stranded RNA-specific editase 1 isoform X2 [Tupaia chinensis] | 0.0 |
| pfu_aug2.0_223.1_10465.t1 | gi|562883943|ref|XP_006169471.1| | PREDICTED: double-stranded RNA-specific editase 1 isoform X1 [Tupaia chinensis] | 0.0 |
| pfu_aug2.0_223.1_10465.t1 | gi|640806577|ref|XP_008059761.1| | PREDICTED: double-stranded RNA-specific editase 1 isoform X3 [Tarsius syrichta] | 0.0 |
| pfu_aug2.0_223.1_10465.t1 | gi|723121914|ref|XP_010284762.1| | PREDICTED: double-stranded RNA-specific editase 1 isoform X3 [Phaethon lepturus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_223.1_10465.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_223.1_10465.t1 atgctgcgtaagaggaaacaccttggtgatgcacaggttattctgggtaaaaagaaacagaaactacagaatgccgggcc aaagaatgccctgatgcaactcaacgaaatcaaacccggactggaattccagtttgtatctcagagtggacctgtccatg ctccgaccttcattatgtgtgtagaggtcaacggcacaaagttcgaaggtcaagggtcaaccaaaaagatcgctaagcta cacgcggcagagaaagccctgaaatcctttgtacagttccccaatgcgtcagaggtccataaggtgatgggtaggaagat aacggatgctgattttacgtcagacgatgcggacatggtacacggtagtgacatgctgttcaataactttgagaatgaag taaaggggcaagagagcatggatctcagtaatggaaaggattccaatgggtctgtcaacatgccaaacggtaaaaagtct gtcgtaccgtcaaaccccgagggtaaaaatcctgtgatgattcttaatgaactacgaccagggctgaaataccagtacgt gtcagagcagggagaaagccacgctaagagttttactatgtcagtaaccgtagacggacaaaagtttgagggaacgggaa gaaacaagaaactggcaaaatccagggcagctcaaatggcacttactaaaatattcaacttggaatttagcttcaaacca ggtacgaagcctgtagaaaagctatcagggagtagtgtaccacaggagcttgcagatctagtatcaaaactggttcttga taagtttggagagcttaccaacaacttcactagtcctctagccaggagaaaagtcttagctggcatcgtcatgacaacag gacagtcatcagaccatgcgtcagttataagtataacgacaggcactaagtgtataaacggtgaatacatgagtgacgag ggattatcagtgaacgattgtcacgccgaagtcatcggcagacgagttctcatgcattacttctacaacgagcttgaaaa acatctatcaagtgatagcagcgttaggtcgtcgtctatatttatagagagaccggagggaggctaccaactcaaagaag atattcactttcacctatatataagcacggccccgtgtggggactcgagaattttctctcctcacgagaacattaaaggt gcggacactcaccccaacaggaaagccaggggtcagctccgtacgaagatagagtcaggagaggggacaataccggtgaa gtcagaaggtatacagacgtgggacggcatcctggagggagggagactactcacgatgtcgtgtagcgataaaatagcca ggtggaatgtactaggtgttcaaggttccttacttagccatttcatacagcccatatactatgacagtttaatattaggc agcctgtaccacggagagcacctgttacgtgccgtttattccagagtgtctaatatcgagggcgtcaaatcaccgtatcg tctaaatcaacctttccttagtggtatcagcaatccagaatcacggcagccggggaaagctccaaatatagccgttaact ggtgtatgggagataactccttcgaagttatcaacacaatgacgggaaagacagaacagggtaattcatcaagactttgt aagcaagcgtttttccgccaattttgcaatctttatggcaaactctcttcatgtaccagtcagagcgtgaccgcacaacc caacctttattccgaggcaaaagtatcagtaatggactatcagttaacgaagaggcagctttacgaagcattccagaagg ctggttacggaagatgggtgaaaaagccgatagaacaagaccagtttggtctactactgcaattggacattttactcctc ggcctttgtgtgctggtggtacctagttttgcagacgatgctactgtctttacatcactcggcagaatcaaaggtgtcca aactgttgacaaggaaactggtaagaaagtttacgaattcagaggaatacggtatgcaaaacctccgacgggagagcgca gattcagaaaaccggatccagtggaaccatgggaaggcgagtacgacgcaacaaactttggatacgcatgcccacaatct gtaaatgagctatttgatgacaaatcgaagaaccaatcagaagactgcttatttttaaatatttatgtcccgcgctcaat ttccagtgaagagaagctgtccgtcatggtttggatccatggtggcggattcatcattggtaacggacatttctatgatg gcacacgattggctgttgatggtaacgttgtcgtggtaacaataaactatagacttggaattctgggatttctagctttg taccatcctgcgtctcggggtaattatggcctatgggatcagaaactggcgctccactggatcagtgattatattgaagc ttttcgcggtaaccccgcctctataaccatatttggtgaatcagctggtggaatgagtgtctctgcgcaatctctgattc catcgaataaagacctattccaaagggtaatagcgcaaagtggtgtcatatctcgcacgctattggtacgcaagaaagtc gcacgaaaagcgttggagagattacccgcaaaaaccaaatgtaaacctgatgatcttttccagtttgtagactgcttgag acaagtggatgtagaaattctcttagaagcatcaagtttctggaattacttaccggaagatagtgtaactttagaaaccg tttatggggtagttgtggacggggaaatatttcctgaacatccggtgaagctgttacaagatcccagttcacatcatgct gttatgctgaggtcgttagactttatgactgggacgacatcacaggaaggttccctgatctacatgtccgtgccacctaa tgtacaagaacgttacaacttcaacatctcagaaaatataccatctgactttatttgtgaaggaattctgcgaccattca tacggctcaattacaaaggcaatgatgctatttacaaaaaaggctgtaagttcttcacttcagtcgggtccaaagaagag ctgagtaatcgcgccgcggacctctttgccgatatgatgtttacgtctgcaacgcgcgaaatgcttaacttccatacaaa gcagaaaaggggaaaaacctatcaatatcagttttcaaagatcagtcctaaaccttttgctatccctcctccaaaatggt tcaaaggaagtggccacggggatgaacttctgtaccttttccggtctgaaaaagagaaccgtccgggaatgattgatata accctgacgggtcacgacagacgagtgtctgatgacatgatttcactgtggacgtcattcgcgaaaactggattacagat ttatcgattgagtgacactctcgcggcaactttgtgtgaaagacagcgtattgtaaggtacgttctacatatcgacccta taacggggcagatatttttcggttcttccattatgatggagaggtcatttctcacttgcctgctgtgcattgtcattatc aatatcatctacgctgaagatgtcaatgtcaaaatatcacttggaacagtaagaggtataaatgtcaaagataaagagac cggtgaaagtgtttatgaattcagaggaatcaggtatggaaaaccgccaactggcgcgcgcaggttcaggaaaccggaag ctgtggatccatgggaaggagagtatgatgcatcacattatggatttgcttgtccgcagcttgtgaacgatttccttgac gacggttcaaggaaccaatcagaggactgtttgtttctgaatgttcaagttccacgtgccttgtcgtccaatgaaaaacg ctcggtgatggtttggattcatggcggtgggtttacaacaggcagcgctttcatgtatgatggaaccagacttgcaatag atggtaatgtcatagtggtttctattaactacagattaggtgttctgggctttctggctttatatcaccctgcttcacga ggaaactatggtctatgggatcagaaactggcactccaatgggtccatgatcatattgagtctttcggtggcaatcccaa ctctgtcaccatatttggcgagtctgctggagggatgagtgtgtcttcacagtcattaataccatcaaatcaaggacttt tccaaagagtcattgcagagagcggcgtagtcggtcgcttttttatggttcgaaaggaagctgctattaaaagcatcgat caactgaagtccaatactgaatgcaaacaaaatgacttattcgggtttgtagattgtcttagatatgttgattcaggaac tttactcaatgctacaaatatatgggctagctttccagatgataagatctcattagaacatccttacagtgtagtcgttg atggagaactttttcctgaacatcctatgaagagtttagaagaccctgattccgctcaatccgtatttttcagatccttg gatttcatgaccggaacaacttctcaagaggggtctttaatccccttcataattttaccatctgttcaacaaaaattcga tttcaatgtaagcgtaaatataccngtagttgaaaatgctactgcgctcaatagataa |
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Protein
| Protein ID | pfu_aug2.0_223.1_10465.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_223.1_10465.t1 MLRKRKHLGDAQVILGKKKQKLQNAGPKNALMQLNEIKPGLEFQFVSQSGPVHAPTFIMCVEVNGTKFEGQGSTKKIAKL HAAEKALKSFVQFPNASEVHKVMGRKITDADFTSDDADMVHGSDMLFNNFENEVKGQESMDLSNGKDSNGSVNMPNGKKS VVPSNPEGKNPVMILNELRPGLKYQYVSEQGESHAKSFTMSVTVDGQKFEGTGRNKKLAKSRAAQMALTKIFNLEFSFKP GTKPVEKLSGSSVPQELADLVSKLVLDKFGELTNNFTSPLARRKVLAGIVMTTGQSSDHASVISITTGTKCINGEYMSDE GLSVNDCHAEVIGRRVLMHYFYNELEKHLSSDSSVRSSSIFIERPEGGYQLKEDIHFHLYISTAPCGDSRIFSPHENIKG ADTHPNRKARGQLRTKIESGEGTIPVKSEGIQTWDGILEGGRLLTMSCSDKIARWNVLGVQGSLLSHFIQPIYYDSLILG SLYHGEHLLRAVYSRVSNIEGVKSPYRLNQPFLSGISNPESRQPGKAPNIAVNWCMGDNSFEVINTMTGKTEQGNSSRLC KQAFFRQFCNLYGKLSSCTSQSVTAQPNLYSEAKVSVMDYQLTKRQLYEAFQKAGYGRWVKKPIEQDQFGLLLQLDILLL GLCVLVVPSFADDATVFTSLGRIKGVQTVDKETGKKVYEFRGIRYAKPPTGERRFRKPDPVEPWEGEYDATNFGYACPQS VNELFDDKSKNQSEDCLFLNIYVPRSISSEEKLSVMVWIHGGGFIIGNGHFYDGTRLAVDGNVVVVTINYRLGILGFLAL YHPASRGNYGLWDQKLALHWISDYIEAFRGNPASITIFGESAGGMSVSAQSLIPSNKDLFQRVIAQSGVISRTLLVRKKV ARKALERLPAKTKCKPDDLFQFVDCLRQVDVEILLEASSFWNYLPEDSVTLETVYGVVVDGEIFPEHPVKLLQDPSSHHA VMLRSLDFMTGTTSQEGSLIYMSVPPNVQERYNFNISENIPSDFICEGILRPFIRLNYKGNDAIYKKGCKFFTSVGSKEE LSNRAADLFADMMFTSATREMLNFHTKQKRGKTYQYQFSKISPKPFAIPPPKWFKGSGHGDELLYLFRSEKENRPGMIDI TLTGHDRRVSDDMISLWTSFAKTGLQIYRLSDTLAATLCERQRIVRYVLHIDPITGQIFFGSSIMMERSFLTCLLCIVII NIIYAEDVNVKISLGTVRGINVKDKETGESVYEFRGIRYGKPPTGARRFRKPEAVDPWEGEYDASHYGFACPQLVNDFLD DGSRNQSEDCLFLNVQVPRALSSNEKRSVMVWIHGGGFTTGSAFMYDGTRLAIDGNVIVVSINYRLGVLGFLALYHPASR GNYGLWDQKLALQWVHDHIESFGGNPNSVTIFGESAGGMSVSSQSLIPSNQGLFQRVIAESGVVGRFFMVRKEAAIKSID QLKSNTECKQNDLFGFVDCLRYVDSGTLLNATNIWASFPDDKISLEHPYSVVVDGELFPEHPMKSLEDPDSAQSVFFRSL DFMTGTTSQEGSLIPFIILPSVQQKFDFNVSVNIXVVENATALNR |
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