Gene
| Gene Model ID | pfu_aug2.0_2238.1_28724 |
|---|---|
| Locus | scaffold2238.1 : 50966 ... 92975 : - |
| To GenomeBrowser | scaffold2238.1:50966..92975 |
| Genes list of scaffold | scaffold2238.1 |
| Synonym | pfu_aug1.0_253.1_00211 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2238.1_28724.t1 | 2 | 1 | SH3_9 | 28 | 82 | 1.6e-07 | 30.7 | 1.3e-10 | 2.8e-07 | 29.9 |
| pfu_aug2.0_2238.1_28724.t1 | 5 | 1 | WW | 133 | 139 | 7.2e-13 | 48.1 | 5.0 | 11000.0 | -3.6 |
| pfu_aug2.0_2238.1_28724.t1 | 5 | 2 | WW | 273 | 299 | 7.2e-13 | 48.1 | 9.5e-08 | 0.0002 | 21.1 |
| pfu_aug2.0_2238.1_28724.t1 | 5 | 3 | WW | 356 | 382 | 7.2e-13 | 48.1 | 7.9e-07 | 0.0017 | 18.1 |
| pfu_aug2.0_2238.1_28724.t1 | 5 | 4 | WW | 434 | 448 | 7.2e-13 | 48.1 | 0.018 | 38.0 | 4.2 |
| pfu_aug2.0_2238.1_28724.t1 | 2 | 2 | SH3_9 | 441 | 454 | 1.6e-07 | 30.7 | 2.6 | 5500.0 | -3.0 |
| pfu_aug2.0_2238.1_28724.t1 | 5 | 5 | WW | 455 | 475 | 7.2e-13 | 48.1 | 0.00016 | 0.33 | 10.8 |
| pfu_aug2.0_2238.1_28724.t1 | 1 | 1 | PH | 563 | 669 | 7.7e-07 | 29.2 | 8.7e-10 | 1.8e-06 | 28.0 |
| pfu_aug2.0_2238.1_28724.t1 | 1 | 1 | PH_9 | 576 | 666 | 7.7e-09 | 35.7 | 9.7e-12 | 2.1e-08 | 34.3 |
| pfu_aug2.0_2238.1_28724.t1 | 1 | 1 | RhoGAP | 822 | 969 | 0.0 | 166.7 | 0.0 | 0.0 | 165.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2238.1_28724.t1 | gi|524893257|ref|XP_005103146.1| | PREDICTED: rho GTPase-activating protein 15-like isoform X4 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2238.1_28724.t1 | gi|524893253|ref|XP_005103144.1| | PREDICTED: rho GTPase-activating protein 15-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2238.1_28724.t1 | gi|524893251|ref|XP_005103143.1| | PREDICTED: rho GTPase-activating protein 15-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2238.1_28724.t1 | gi|524893255|ref|XP_005103145.1| | PREDICTED: rho GTPase-activating protein 15-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_2238.1_28724.t1 | gi|524893259|ref|XP_005103147.1| | PREDICTED: rho GTPase-activating protein 15-like isoform X5 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2238.1_28724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2238.1_28724.t1 atgactgcaactgaaaataggaccagttcaattgatgatgatttcaacccgtatttagacctcccaataacaaaactcaa agcgttatatgactattcatatagagatgatgatggtcatgtagtaaatatgagaaagggggaggagtatcacctcttac agaaacaaggagattggtgggaggtaataagagatgcaggcgatacaaatgaattgtctttttatgttcctgcaaattat gttgaaattgttggtagagggctaaagggccctgagcctccacctaaacgtacatcaactggatcacatcaaggaaatga aagtgggtctgagtcattgaacaatagtataacaaaggatgtagttttcaatttagacacgggtttagatacagacaatg taaacactggtgaaacaataagtgatagtacggtttctaaaatggagcctttttatgtaaacagtgatgatactggtgtg ataaactttgagagaaaaaactctacttctacttttacatcgttcagtagtaaaactttgccctcaaattctgggatcag tactaaaccagaatgtgtgcgtagaagtttttcagaagatggggagtatgttaatcttgatagatacagaaatgaagctg ggcttacctcggagaggacagatggatctaggggtgaagactcggacctctatgcaaatgttacacagcttgataaccag aaggatgagaggacgcaggcgagtcagaaccgagacgaccgagatttactccctggcgacacaccgggaacttacatgag aactctactagatgtatgggatatgtacctcgacaaagattcgaacagaatctattatataaacagggaaacgcaagaac gaaccttcaaaccccctcgtcatcccaataaggcggaacagggtgaagactcggacctctatgcaaatgcttcacagctt aataaccagaaggatgagaggacgcaggcgagtcagaaccgagacgaccgagacttactcactggcgacacaccgggaac ttacatgagaactctactagatgtatgggatatgtacctcgacaaggactcgaacagaatttattatataaacagggaaa cacatgaacgaaccttcaaaccccctcgtcatcccaataaggcggaacagttcaagcatttggaacaaaagccggtggcg gtacccagcgttacagaacagagaaagcggagtgcaccacagctgaaatttccacatgaattaagtagtgccaacattcc agacggctatgtggtagaggagacggatggaagaactctctatatcaaccctaataccaatgaaaggtggtgttcaaatg taaatacagatggagaaaaatattattataagattggcacagaagaaactgtatgggaccttccaaagattgtgatgagc cccgattcacccccaccacccataacgagagagaggtcaccgcagggttcgccctccgtcgcacgatcagtaaaggcacg ttcaatgattattggcaacaagatacgaatggaaacgccagctaatcttcctgccgctttacctaagtcctctactttac ctctgctatctactccagcactaatggaggaaacagataccgataagagaagtacccaattatctgcagctccagtggac tctttagatggtacactcaataaggcaaagattgtggagggtggaaaagccaaaaagaaaaactggagccagtcttacgt aaagttatcggggacaaatttagtattttataagaatcaaatggcagctaaaagtcagcagaattctccgcacggtcgtc cggagtttatcgtaccactgatcggagctcatgcggacaaacatacaaaggataaatccagtagaaagaatgttataacg ctaaaaacgtctcaaggggatgagtatttattacatcacgatgatgagccaacaatactgaaatggctcgcacatctaga agttgctatcaatggcttgggtacagtcagtggtttagaactgccagtttttgaggaaacttcaatatccaaggacaaaa ggaaaaattccttcaaacgttttgtgttctctgatttcagatgctgtatttggtgcacatttgaaggttttgtgttctct gatttcagatgctgtattcggtgcacatttgaaggttttgtgttctctgattcagatgctgtattcggtgcacatttgaa ggttttgtgttctctgatttcagatgctgtattcggtgcgcatttgaaggttttgtgttctctgatttcagatgctgtat tcggtgcacatttgaaggttttgtgttctctgatttcagatgctgtattcggtgcacatttgaaggttttgtgttctctg atttcagatgctgtatttggtgcacatttgaaggttttatgtgacaaagaaaaggggaaaatcccaaagtttgttgtgaa gtgtgttactgccattgaaaaaagaggtttagaccatgatggtctgtatagaatcagtggtaaccttgctcagattcaga aactcaggtgtcaagttgaccaagatagctacaatctagatgaggatcgctgggacgttcatgtattaacaggttcatta aagctgttcttccgagagttgaaggaaccactgtatacgtttctgatgtttgatagattcgtcccagcattaagtaaaga gaagaattcagacagattaaaggctgtgaaggagctaatatcaactctacccaagtataactatgaaaccatgaaattcc tgtttgctcatttactcaaagtgatagatatgagtaaagaaaacaggatgcaggttcacaatgtcgcaatagttttcggg ccaacgttaatttggccggaaaaagaatcgccaaacatggccgcgaatatggtgtatcaaagcagaattgtagaatattg cctgctggaatataaaaacatatttaggtga |
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Protein
| Protein ID | pfu_aug2.0_2238.1_28724.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2238.1_28724.t1 MTATENRTSSIDDDFNPYLDLPITKLKALYDYSYRDDDGHVVNMRKGEEYHLLQKQGDWWEVIRDAGDTNELSFYVPANY VEIVGRGLKGPEPPPKRTSTGSHQGNESGSESLNNSITKDVVFNLDTGLDTDNVNTGETISDSTVSKMEPFYVNSDDTGV INFERKNSTSTFTSFSSKTLPSNSGISTKPECVRRSFSEDGEYVNLDRYRNEAGLTSERTDGSRGEDSDLYANVTQLDNQ KDERTQASQNRDDRDLLPGDTPGTYMRTLLDVWDMYLDKDSNRIYYINRETQERTFKPPRHPNKAEQGEDSDLYANASQL NNQKDERTQASQNRDDRDLLTGDTPGTYMRTLLDVWDMYLDKDSNRIYYINRETHERTFKPPRHPNKAEQFKHLEQKPVA VPSVTEQRKRSAPQLKFPHELSSANIPDGYVVEETDGRTLYINPNTNERWCSNVNTDGEKYYYKIGTEETVWDLPKIVMS PDSPPPPITRERSPQGSPSVARSVKARSMIIGNKIRMETPANLPAALPKSSTLPLLSTPALMEETDTDKRSTQLSAAPVD SLDGTLNKAKIVEGGKAKKKNWSQSYVKLSGTNLVFYKNQMAAKSQQNSPHGRPEFIVPLIGAHADKHTKDKSSRKNVIT LKTSQGDEYLLHHDDEPTILKWLAHLEVAINGLGTVSGLELPVFEETSISKDKRKNSFKRFVFSDFRCCIWCTFEGFVFS DFRCCIRCTFEGFVFSDSDAVFGAHLKVLCSLISDAVFGAHLKVLCSLISDAVFGAHLKVLCSLISDAVFGAHLKVLCSL ISDAVFGAHLKVLCDKEKGKIPKFVVKCVTAIEKRGLDHDGLYRISGNLAQIQKLRCQVDQDSYNLDEDRWDVHVLTGSL KLFFRELKEPLYTFLMFDRFVPALSKEKNSDRLKAVKELISTLPKYNYETMKFLFAHLLKVIDMSKENRMQVHNVAIVFG PTLIWPEKESPNMAANMVYQSRIVEYCLLEYKNIFR |
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