Gene
| Gene Model ID | pfu_aug2.0_224.1_13819 |
|---|---|
| Locus | scaffold224.1 : 45187 ... 66435 : - |
| To GenomeBrowser | scaffold224.1:45187..66435 |
| Genes list of scaffold | scaffold224.1 |
| Synonym | pfu_aug1.0_15382.1_03604 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pre-mrna-splicing factor rbm22 | GO:0000060 GO:0000166 GO:0005487 GO:0005654 GO:0005737 GO:0017069 GO:0033120 GO:0035690 GO:0036002 GO:0044822 GO:0045292 GO:0046872 GO:0048306 GO:0071013 GO:0090316 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_224.1_13819.t1 | 1 | 1 | RRM_1 | 248 | 312 | 2.1e-14 | 52.8 | 2.0e-17 | 3.8e-14 | 52.0 |
| pfu_aug2.0_224.1_13819.t1 | 1 | 1 | RRM_6 | 248 | 313 | 2.4e-11 | 43.4 | 2.3e-14 | 4.2e-11 | 42.6 |
| pfu_aug2.0_224.1_13819.t1 | 1 | 1 | RRM_5 | 262 | 316 | 1.9e-10 | 40.4 | 1.9e-13 | 3.6e-10 | 39.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_224.1_13819.t1 | gi|338713130|ref|XP_001917686.2| | PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor RBM22 [Equus caballus] | 0.0 |
| pfu_aug2.0_224.1_13819.t1 | gi|548474922|ref|XP_005683234.1| | PREDICTED: pre-mRNA-splicing factor RBM22 isoform X2 [Capra hircus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_224.1_13819.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_224.1_13819.t1 atgatcaatattctgaccactctatgtaatacggctattaatgacgtctggacagtccagatcaattgtcagcctcctcc tatcagcacagagcaggaattccccattttgtgtcagacttgcttgggagataatccatacattcgaatgatgaaagaaa agtatggcaaggagtgcaagatctgtgctcgtcctttcacagtctttagatggaatcccggagcacgaatgaggttcaag aaaacagaggtctgtcaaacgtgtagtaagctgaaaaacgtgtgccagacttgtttgctagatctggaatatggtttacc tgtacaggtcagggatcatgcattaaaagttcaagacacaatgccaaagtctgacgtcaacaaggaatactacacacaga atatggaaagagaaataggcaacagtgacggtataagtgccgtgggagcgctaggtaaagcccaggcccccagtgatatg ctcttaaagttagccaggaccacaccctactacaagcgaaacagacctcacatctgctcattctgggtcaagggggaatg taagagaggagaggagtgtccatacagacatgacaagccgacagatccggatgatccgctggcggaccagaacattaagg atcgattctacggtacagatgatcctgtggccgagaagttactacggcgatacagcgatctacccaaactggagatacca gaggataaaactataactactctttatgtggggaatctcggagaaaaaattggggaaacagaattaaaggatcatttcta ccagtttggtgagatacgttccataaacgtggtcagcaaacagcagtgtgcgtttgttcagtttacaactcgatcgtcag cggagcaagctgcggaaaagtctttcaacaagctaattatcggtgggaggagactgaatatcaagtggggcagatctcaa ggtcagcagatggcagtaaagagggacggagaggaggacgaggccaagttagagcccgtccccggactcccaggaggagc tcgtctgccgccccctcccccaggcatgatgcctatgagacctcctccagggatccctagaatgcctgtccattacccct cacaggatcccacaaggatgggggcaatatcagtcagtgccccaccctcacagaacactacttga |
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Protein
| Protein ID | pfu_aug2.0_224.1_13819.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_224.1_13819.t1 MINILTTLCNTAINDVWTVQINCQPPPISTEQEFPILCQTCLGDNPYIRMMKEKYGKECKICARPFTVFRWNPGARMRFK KTEVCQTCSKLKNVCQTCLLDLEYGLPVQVRDHALKVQDTMPKSDVNKEYYTQNMEREIGNSDGISAVGALGKAQAPSDM LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHDKPTDPDDPLADQNIKDRFYGTDDPVAEKLLRRYSDLPKLEIP EDKTITTLYVGNLGEKIGETELKDHFYQFGEIRSINVVSKQQCAFVQFTTRSSAEQAAEKSFNKLIIGGRRLNIKWGRSQ GQQMAVKRDGEEDEAKLEPVPGLPGGARLPPPPPGMMPMRPPPGIPRMPVHYPSQDPTRMGAISVSAPPSQNTT |
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