Gene
| Gene Model ID | pfu_aug2.0_224.1_13821 |
|---|---|
| Locus | scaffold224.1 : 90738 ... 124225 : - |
| To GenomeBrowser | scaffold224.1:90738..124225 |
| Genes list of scaffold | scaffold224.1 |
| Synonym | pfu_aug1.0_33775.1_70101 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| histone h2a deubiquitinase mysm1 | GO:0003713 GO:0004843 GO:0005654 GO:0006338 GO:0008237 GO:0015630 GO:0032403 GO:0035522 GO:0042393 GO:0045944 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_224.1_13821.t1 | 1 | 1 | Myb_DNA-binding | 101 | 145 | 4.5e-10 | 39.4 | 3.2e-13 | 9.4e-10 | 38.3 |
| pfu_aug2.0_224.1_13821.t1 | 4 | 1 | JAB | 310 | 329 | 7.7e-11 | 41.7 | 2.0 | 5900.0 | -3.0 |
| pfu_aug2.0_224.1_13821.t1 | 1 | 1 | SWIRM | 450 | 513 | 1.3e-06 | 28.4 | 1.3e-09 | 4.0e-06 | 26.8 |
| pfu_aug2.0_224.1_13821.t1 | 4 | 2 | JAB | 466 | 502 | 7.7e-11 | 41.7 | 3.1 | 9200.0 | -3.7 |
| pfu_aug2.0_224.1_13821.t1 | 4 | 3 | JAB | 631 | 721 | 7.7e-11 | 41.7 | 9.4e-14 | 2.8e-10 | 39.9 |
| pfu_aug2.0_224.1_13821.t1 | 1 | 1 | Prok-JAB | 638 | 719 | 1.2e-06 | 28.0 | 9.1e-10 | 2.7e-06 | 26.8 |
| pfu_aug2.0_224.1_13821.t1 | 4 | 4 | JAB | 734 | 758 | 7.7e-11 | 41.7 | 3.1 | 9300.0 | -3.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_224.1_13821.t1 | gi|676477078|ref|XP_009060997.1| | hypothetical protein LOTGIDRAFT_126355 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_224.1_13821.t1 | gi|594619392|ref|XP_007164431.1| | PREDICTED: histone H2A deubiquitinase MYSM1 isoform X4 [Balaenoptera acutorostrata scammoni] | 0.0 |
| pfu_aug2.0_224.1_13821.t1 | gi|348556568|ref|XP_003464093.1| | PREDICTED: histone H2A deubiquitinase MYSM1 [Cavia porcellus] | 0.0 |
| pfu_aug2.0_224.1_13821.t1 | gi|591328038|ref|XP_007089937.1| | PREDICTED: histone H2A deubiquitinase MYSM1 isoform X1 [Panthera tigris altaica] | 0.0 |
| pfu_aug2.0_224.1_13821.t1 | gi|507693248|ref|XP_004642596.1| | PREDICTED: histone H2A deubiquitinase MYSM1 [Octodon degus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_224.1_13821.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_224.1_13821.t1 atggcggaggagggagagatcgacatcgaaggagattttgattttagaattgatactgataatgacatctatgatgccaa tgagctgccctcaaagagtgctaatttactaccggagtataccaaccctgcatggatgctggaacagggatggacgatgg acagtggaatggatgagaaatctaaagctaccattgagaagatgctacaagaagaacaatattacattaatggaaagggg aagggtagagtaacaagaggcggatatattagaaaatccccatccaaacctcagtcacacaaacaaccatggacagaaga agaaaagctgtgttttcttagggggctggaaatatttggtaggagctggaccaaagttgcagaattaattccaagtagaa cagttttacaagttaaaaactatgctcagcagtacttcaaacaaaaggcaaaaggagatactgataccgaggatttgctt ttgactgattcctgtcttcatactctagcatcaaaacccagagaattaaaccctaattctgtaaactcacccaaatctcc tagtcagaataacaggaattctgtgttatcaagacaaaatgcttcacctaaagtcgcaacaaaaaatgtgaaaaatatga tgaatcagaagacagtatcatcagttagcactctgtccaggtctgtgaaaaaggaagctgcatttgatcctatatctgaa gtattagcctcggtgaccactgcccagccaaccataacaacattacgacctagttctgcagctgtttctatgaccttgac ccagtcaataggtcaggtgtctaattcctcactgttagcacagctaaggtctcaagttcagcagagtaaagtgaatgttt taaactctgtagacaaagtgtttgatccatcaggtgatatagtattagcctctcatgcatcactgaatacatttcctgac cagaaaatagtaaaaacacattctaaaaagaattccaaacctgaaatattagaaactatggagattaaatggaatttaca taaacaatccttggatgttgaagaggataagaaaaaattacaactgagtccgacattagagaataagttagcaagtagca caggcataatagaaaatctggatcgtttttgtgctgtggcagatatcattactgaaggagaagatttggaagatgatgaa gaaatagatatagaaaatgaagatgacgtagaggagaacccagttctacaaaatagatcggcatcgcctaactctgtgta cgagaaactgctgaaagcagctaatgctagcaagaaaaccccaataaaaaggcccgttgtacacaatacattgtgcaata attacaaagtggttaggaatggtatatctgatgaacagtgtgatgataaatcagaggaaaataaaaaagaaagtaaagaa gtgagagagaatatacgaccgggtctaaagaattgtggggacgtcaatgtcataggcagaattcatgcttacctagaatg tacaggggtcatcaactttggttgtgaacaatgctgttataataatccatcaagacctccgtcatcggggccccgtgata gactgcccaaagaaaacgtacagatctgtatggctaaactggaatccatgagacccaggaaaagacgtattaaggatgct tatggtcagtggatagatgaaaaagaggctcaaggaaaaactatagagcatatagagggagctgaggagacagatgattc tatcaaacagaaggttgctcgtcataccaaatctaactatgatccatttaaacttataccttgtctcaagttttcagagg agaaaaaggctccctttaacgtagaggtatataatagtgccttgatcacgatggacctacatgctcatgtatctaagacg gaggttataggactactagggggcgtgttctgtgacaaatcacacacgttagaagtccgtatggctgtaccgtgtaatag tatcagtactggaatgcagtgtgaaatggatccagtatcccagacagaggcttgtgagaagataatgatgaaggagtaca atgtaataggctggtaccattcccatcctgcattcctacctaacccctctgtacgggacatagaaactcagctcaaattc caggtactgaaacttaaattgataagggtagaactacagggcatgtacaggacctccactggaatcacatgtttaggcaa aatgatagattccttacgacatagtatgatagctgactgtgatgtaagtgaatttattcttaattccatataccagatat tctgttcgacatttggtggtacagatatggaggttgtatatgaggaagaaatcaactctatggaaatagtcagctctgaa gccgaacactccaacgagaacttagaactcggtattgctgaactagatccctcggaacaggtgatcactcaggatgttct cacaggtgatagcattattacaggtgatgactcacctgaggatgatccaacaggtgataggatagacacaggtgaaagga tattagataacacacataatgatagtgcaatacagggagatagcatacagtctggtcataatatattccaaggtgataat ttatccgaggatgttttacatggtgataagataaatactgttgataatgcacatgaagataatgtaatatgtggtgataa aataagaattggtgataatgtattccatggtgataatatacaaactggtgttaatgtattccatggtgataatatacaaa ctggtgataatgtattccatggtgatgatatacaaactggtgataatgtattccatggtgataatatacaaactggtgat caataa |
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Protein
| Protein ID | pfu_aug2.0_224.1_13821.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_224.1_13821.t1 MAEEGEIDIEGDFDFRIDTDNDIYDANELPSKSANLLPEYTNPAWMLEQGWTMDSGMDEKSKATIEKMLQEEQYYINGKG KGRVTRGGYIRKSPSKPQSHKQPWTEEEKLCFLRGLEIFGRSWTKVAELIPSRTVLQVKNYAQQYFKQKAKGDTDTEDLL LTDSCLHTLASKPRELNPNSVNSPKSPSQNNRNSVLSRQNASPKVATKNVKNMMNQKTVSSVSTLSRSVKKEAAFDPISE VLASVTTAQPTITTLRPSSAAVSMTLTQSIGQVSNSSLLAQLRSQVQQSKVNVLNSVDKVFDPSGDIVLASHASLNTFPD QKIVKTHSKKNSKPEILETMEIKWNLHKQSLDVEEDKKKLQLSPTLENKLASSTGIIENLDRFCAVADIITEGEDLEDDE EIDIENEDDVEENPVLQNRSASPNSVYEKLLKAANASKKTPIKRPVVHNTLCNNYKVVRNGISDEQCDDKSEENKKESKE VRENIRPGLKNCGDVNVIGRIHAYLECTGVINFGCEQCCYNNPSRPPSSGPRDRLPKENVQICMAKLESMRPRKRRIKDA YGQWIDEKEAQGKTIEHIEGAEETDDSIKQKVARHTKSNYDPFKLIPCLKFSEEKKAPFNVEVYNSALITMDLHAHVSKT EVIGLLGGVFCDKSHTLEVRMAVPCNSISTGMQCEMDPVSQTEACEKIMMKEYNVIGWYHSHPAFLPNPSVRDIETQLKF QVLKLKLIRVELQGMYRTSTGITCLGKMIDSLRHSMIADCDVSEFILNSIYQIFCSTFGGTDMEVVYEEEINSMEIVSSE AEHSNENLELGIAELDPSEQVITQDVLTGDSIITGDDSPEDDPTGDRIDTGERILDNTHNDSAIQGDSIQSGHNIFQGDN LSEDVLHGDKINTVDNAHEDNVICGDKIRIGDNVFHGDNIQTGVNVFHGDNIQTGDNVFHGDDIQTGDNVFHGDNIQTGD Q |
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