Gene
| Gene Model ID | pfu_aug2.0_224.1_13829 |
|---|---|
| Locus | scaffold224.1 : 224333 ... 286069 : + |
| To GenomeBrowser | scaffold224.1:224333..286069 |
| Genes list of scaffold | scaffold224.1 |
| Synonym | pfu_aug1.0_6720.1_52820 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_224.1_13829.t1 | 1 | 1 | Transglut_N | 88 | 193 | 2.7e-18 | 66.1 | 1.1e-20 | 9.9e-18 | 64.3 |
| pfu_aug2.0_224.1_13829.t1 | 1 | 1 | Transglut_core | 324 | 410 | 6.7e-15 | 55.2 | 1.7e-17 | 1.5e-14 | 54.1 |
| pfu_aug2.0_224.1_13829.t1 | 2 | 1 | Transglut_C | 534 | 635 | 1.2e-12 | 47.8 | 6.0e-08 | 5.2e-05 | 23.2 |
| pfu_aug2.0_224.1_13829.t1 | 2 | 2 | Transglut_C | 645 | 714 | 1.2e-12 | 47.8 | 1.2e-07 | 0.0001 | 22.2 |
| pfu_aug2.0_224.1_13829.t1 | 2 | 1 | CorA | 1338 | 1453 | 2.2e-08 | 33.5 | 2.7e-07 | 0.00023 | 20.2 |
| pfu_aug2.0_224.1_13829.t1 | 2 | 2 | CorA | 1539 | 1630 | 2.2e-08 | 33.5 | 6.9e-06 | 0.006 | 15.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_224.1_13829.t1 | gi|557332481|ref|XP_006039042.1| | PREDICTED: protein-glutamine gamma-glutamyltransferase K, partial [Alligator sinensis] | 0.0 |
| pfu_aug2.0_224.1_13829.t1 | gi|564230784|ref|XP_006259796.1| | PREDICTED: protein-glutamine gamma-glutamyltransferase K [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_224.1_13829.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_224.1_13829.t1 atgtcgcgtaggagagcagacaatacgacagggggaggctctcttcctccaaaacggggacgctacagcctcaggcctcg ccgaaatcgtccttattatggatatggtctcaacattaccaacccagtcattgatgatgaaggccgcaaaaataatctcg acacagaagacttcctggcggaaaccattgttctgaaagaatccaaaaagtatggaaaggccttaaacttgatcaaaatt gcggtgtttggaaagagtgtccaagagcaccatacatatgattacaaacacccggacattatactcaggagaggacaacc ttttacgatagaaattgagtttgaccgagtcatcagcaaaaaggatatagctactttggaatttgcctatggcagaactc ctttagagagcaaaggaactaacaatcgtctcgatattgatctacaaaataaaaagaaaacaaccaacattaacggctgg ggagtagaggttctggatgtggacgagactaaagtacggtgcacagtatggaccacggctgatagcagtatcggaatata ccgactgtttacggacaccaggatatctggaaactcaaaaccggaggcacgagtgatcaaggaatacaagaatcggaagt taatacttctctttaatgcttgggaacaagacgatactgtgtatatggagggagaagacaagaggcaagaatatgtaaaa aacgacacagggctaatatggggaggaaatgcgtggaaacatgaaggttgggcttggaatttcggacagtttgagaggcc agttctggacgtgaccctatcactgctagagaaggcaaacagttctgacgaagacggtgttttggaaggtagatgggaag ataaatggccaaagaattgcaagttgccatgggaatgggttagtagtgtcgatatcctgaaggaatttgacaaaactcaa aaatctgtacaatttggacaatgctgggtattctctggaattctaacttcaatgtgtagagccctggggattcctacacg atctgttacaaactttgaatcagcccacgattacgaccaaagcatgacaatagatactcatattgacgatgatggtgatc ctatagaacatctggatgacagtatatggaattttcacgtatggaatgaatgttggtttaaacgtaacgatctaccagag ggaaatgacggatggcagttagttgacgcgacgccccaggaagcaagcgagaaaataatgcgatgtggaccagcaccatt ggccgccattagagaaggacgtgtgtatctgaactatgacgtaggtttcgcctttgctgaagtgaacggcgataaaataa gatggaggagacaagaggatggtacattagaagtgattggtatagacaaaaacgcaattggcaaaaagataagcacaaag caagtggggagtgacgaaagggaggaccttacactacagtacaaatatccagaaggttccaaagacgaaagacgagtggt agaatctgtcaatcatttcagtggaaacaccaggaaaaggaacatttacagagagtatgacacgacaccagagttcaaga tagaagttgacactccagaggacacactgataggaaacgactttgagattggaattaaagtgaaaaatctgaccaaaaag aatgctagcaccaaaataagggccaccgtgatatacaaactatacactggtgtacccggtaaacgactgacaggctttat gtctgaagatgacataaaagccaatggatcaaaagaggtatctgtggcagtttctttgaaagactacaagcagtatataa atcctgatggatctttcaaaatctttgtcactgcaagaaatatggagacgagaaaagtgaaagtttacgagagaattttc tctctgcgtaatccagacattctgattgagacgccagacattattacctatggtaaggaaaagcaaatcaaaataaagtt gaaaaacactacaccgctaacattgaacaatgctacaatgaccatccatggatcaggattgatggaaccaaaaaccgaaa aattaaaggatccaataaaacctggtcagcagatacttgagacggtaacggtcaaaccggaactgggccggtcacttttg tcatgtgactaccctgacggtttacagtcgtccacgtggtatgacagcggtaaaggtcaactcacctttacaaccaatca gatgtccggatggtctgtaccagtgtattcatccgcggtaaacagctgggactgcttcttgaagaacgataaatatgtac tctcaaggagttccaatgtcgtcacggtgttcagcgtcgattactacgcctatctatgcatggatgttaccatggttacc ggtcattcttactattactatctaagacatgatacccaacagaatgctaatgacgagcgtgtttacgtcatcgaggcaac aatcagcgtgacatcactagatcaagcttgtacgccaacgtcaggtcctgttacagaggagttccacgtcttgatcagac aaggtaatgagtccaacgccaaatcttggtgcccctccccactattagggagtttcgagtacacatatgacgacaatgtg gggatgacgtcatgcggggcggggtctatctgggacgtatgtactgaccgcaccaccatgacttttaactataccctatg ttcaacagttttggcatactcacaggaaggagaggtttattgtaccgttgtcttgcagagcggaagtacttactacgtca gtgttctcaatccgggctcagtagatggcgccagttactacagatttacttgcctttctgtaagcttatccggttccacg gtgtacactagtcagcgaccaggggaatgtgaagtgggtcaaacaccccaaacagcgccgtctggtggagcgacgatgac gttaacaccttattacaaggacgaccgatttgaaaaaataaaaactggaattgagtggccaaaaagtttggataaagaac aaaagatgggctgcaaaaatcacacgggaaatgaatatgctgtgatgtttcctcaaagtcatctcgaaatcgaatatgat cttcaagtcatcatcacatcacgagaggatgccacagtcgacatagtatctccatatccaggggtaaatcagacggtaaa tgtcaagtcaacagaaggtcttatcgtccctattccatctaactttacatcgtcgtttaatgacacatattctaaaggaa tacttgtaaaatctaacaagcaaatttctgtgtatggcactacacaaagagaatctacatatggcgaagctttcatggcg attccaacaagatttctgtcaaactcgtactatgcagcttcgtataattatacccttgccacagtggttgtcttgtacga tgatactcaactcaacaagtcttacatcggctctggaacaaacgtcacgcttcaaagggacctgtcaagtctgaaggtcc acgactcggtcccattggatagaacatctattcaactaacgagtaataaagagataggagtcatagctagcgcccgctcc tttaaccaatttggaagcagatatgattatacgtggcagaggagttcgaaccttcgtacttatttaagagcaaaacactg cactcaagtcctttcgtacattccgcctatatcgtcacttgggaatgttttcattatacctcaaacgacaatggcaaatt tctctttacttcacatagagagcgactgggaaaagaattgttttgtgtcgtttcgcagtgattccttcagcaaaacagcg aattttaccattgattatcaatatgagttagaacctgggctaccatatgtaatggagacaagtctaccttctgttgcagt tctctttattggacttgccaattcaacatatagtacttcaatattaattccttccatacgtcaatattcaaatcattaca aattcatagcaccattcaacgggaatttccagcactctgcaataatcatgatagaaaataagcataatgaagcggaaatg atgaagacgacgaacggatttgtctgtggtgttggcacttacttagagcggacgctaaataaactgtacgattctatgga ggaaaggatgaaatcaatggacgaaaaattagacgacataggcagaaacatggaaaatatggagagaaaattgaattata ccaaactgaagacggaattattagacagaaaaatgattgaattgcacgactttgttctaaaacaaagggaaacgatgaac aaagaagtagaatttttggttagatttatctacgatgaggcagatttgaatgatcttcaaggtgacaataaaacaaaact ttgctcaacttcaacaggcaaggacgaccgccataaaaagctacaaaccggaattcagttgctaaacaaattggacaagt cggaaggggaggaaaagttaggctgcaaaaatcatacgggaaatgaatatgctgtgatgtttcctcagactcatcttgaa accgaatatgatcttcaagtcatcatcacatcgcgagaggatgctatcgttgacatactatctccatatcctgggaatga aacggaaatgttgaagacgacgaacggatttgtctgtggtgttggcacttacttagagcggacgctgaataatgtccacg attctatgaaagagaagatggaatctatgaacgaaaaactagataatataggcagaaatttggaaaaaatggacaaaaaa ttgaacaataccaaactgaagacggaattattagacagaaaaatgattgaattgcatgactttgttctcaaacaaaggga aacgatgaacaaagaggnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnntagagcttttggttagatttatctacgatgaggctgatttgaattatcttcacgg tgacaataaaacaaaactttgctcaacttcaacgagcgaggacgaccgccataaaaagctacaaaccggaattcagttgc taaaaaaattggacaaggcggatggggaggaaacgttaggctgcaaaaatcatacaggaaatgaatatgctgtgatgttt cctcagactcatcttgaaaccgaatatgatcttcaaatcatcattacatcgcgagaggatgctatcgttgacatactatc tccatatcctggggtaaatcagacggttaacgtcaagtcaacagaagcttcgtataattatacccttgctaccgtggttg ccgtccacgatgatactcaactcaacaagacttacaccagttctttcataaattctactcttcaagaaactctgtcaagt ctcaaaacagatgactcggtgtcatcacgtagaacatctatacagttaacgagtaataaacaaattggagtgattgctag ttcccgttgctttaaccaatttgctcgcttaaagaaagtaccttcaaagaaatactgcagccaagccctttcgtacatac cgcctatacgagcactaggaaatgttttcataataccccaaatgacaaaagcgaattcatctttacttcacatagagagt gactggaaaacccataactacgtattgtttcgaaatgaagtcattaacgaaactgcaaatttcaccattgattatcaata tgagttagaacctgggctaccatatgtaatggagacaagtctaccctctgttgcagttctctttattggacttgccaatt caacatatagtacttcaatactaattccttccatacgtcaatattcaaatcactacaaattcatagcatcattcaacagg attttccagcactcagcaataatcatgatagaatataagcatgtaaatggattaaaatttgacggacaacctctcaagag tgtatacactgacagtaaaacaatcaatgctgaaaacactctatacgaagtaatcaccatgaacattaccgaaggtctgc acgatgtacaccacgtggaaaatgacgtcacttttggtttgatagcgctaggattttcagctactgatgtctatggtttc ccagtagggttatatttgggagaagaaaactgcagagaccagtag |
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Protein
| Protein ID | pfu_aug2.0_224.1_13829.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_224.1_13829.t1 MSRRRADNTTGGGSLPPKRGRYSLRPRRNRPYYGYGLNITNPVIDDEGRKNNLDTEDFLAETIVLKESKKYGKALNLIKI AVFGKSVQEHHTYDYKHPDIILRRGQPFTIEIEFDRVISKKDIATLEFAYGRTPLESKGTNNRLDIDLQNKKKTTNINGW GVEVLDVDETKVRCTVWTTADSSIGIYRLFTDTRISGNSKPEARVIKEYKNRKLILLFNAWEQDDTVYMEGEDKRQEYVK NDTGLIWGGNAWKHEGWAWNFGQFERPVLDVTLSLLEKANSSDEDGVLEGRWEDKWPKNCKLPWEWVSSVDILKEFDKTQ KSVQFGQCWVFSGILTSMCRALGIPTRSVTNFESAHDYDQSMTIDTHIDDDGDPIEHLDDSIWNFHVWNECWFKRNDLPE GNDGWQLVDATPQEASEKIMRCGPAPLAAIREGRVYLNYDVGFAFAEVNGDKIRWRRQEDGTLEVIGIDKNAIGKKISTK QVGSDEREDLTLQYKYPEGSKDERRVVESVNHFSGNTRKRNIYREYDTTPEFKIEVDTPEDTLIGNDFEIGIKVKNLTKK NASTKIRATVIYKLYTGVPGKRLTGFMSEDDIKANGSKEVSVAVSLKDYKQYINPDGSFKIFVTARNMETRKVKVYERIF SLRNPDILIETPDIITYGKEKQIKIKLKNTTPLTLNNATMTIHGSGLMEPKTEKLKDPIKPGQQILETVTVKPELGRSLL SCDYPDGLQSSTWYDSGKGQLTFTTNQMSGWSVPVYSSAVNSWDCFLKNDKYVLSRSSNVVTVFSVDYYAYLCMDVTMVT GHSYYYYLRHDTQQNANDERVYVIEATISVTSLDQACTPTSGPVTEEFHVLIRQGNESNAKSWCPSPLLGSFEYTYDDNV GMTSCGAGSIWDVCTDRTTMTFNYTLCSTVLAYSQEGEVYCTVVLQSGSTYYVSVLNPGSVDGASYYRFTCLSVSLSGST VYTSQRPGECEVGQTPQTAPSGGATMTLTPYYKDDRFEKIKTGIEWPKSLDKEQKMGCKNHTGNEYAVMFPQSHLEIEYD LQVIITSREDATVDIVSPYPGVNQTVNVKSTEGLIVPIPSNFTSSFNDTYSKGILVKSNKQISVYGTTQRESTYGEAFMA IPTRFLSNSYYAASYNYTLATVVVLYDDTQLNKSYIGSGTNVTLQRDLSSLKVHDSVPLDRTSIQLTSNKEIGVIASARS FNQFGSRYDYTWQRSSNLRTYLRAKHCTQVLSYIPPISSLGNVFIIPQTTMANFSLLHIESDWEKNCFVSFRSDSFSKTA NFTIDYQYELEPGLPYVMETSLPSVAVLFIGLANSTYSTSILIPSIRQYSNHYKFIAPFNGNFQHSAIIMIENKHNEAEM MKTTNGFVCGVGTYLERTLNKLYDSMEERMKSMDEKLDDIGRNMENMERKLNYTKLKTELLDRKMIELHDFVLKQRETMN KEVEFLVRFIYDEADLNDLQGDNKTKLCSTSTGKDDRHKKLQTGIQLLNKLDKSEGEEKLGCKNHTGNEYAVMFPQTHLE TEYDLQVIITSREDAIVDILSPYPGNETEMLKTTNGFVCGVGTYLERTLNNVHDSMKEKMESMNEKLDNIGRNLEKMDKK LNNTKLKTELLDRKMIELHDFVLKQRETMNKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXELLVRFIYDEADLNYLHGDNKTKLCSTSTSEDDRHKKLQTGIQLLKKLDKADGEETLGCKNHTGNEYAVMF PQTHLETEYDLQIIITSREDAIVDILSPYPGVNQTVNVKSTEASYNYTLATVVAVHDDTQLNKTYTSSFINSTLQETLSS LKTDDSVSSRRTSIQLTSNKQIGVIASSRCFNQFARLKKVPSKKYCSQALSYIPPIRALGNVFIIPQMTKANSSLLHIES DWKTHNYVLFRNEVINETANFTIDYQYELEPGLPYVMETSLPSVAVLFIGLANSTYSTSILIPSIRQYSNHYKFIASFNR IFQHSAIIMIEYKHVNGLKFDGQPLKSVYTDSKTINAENTLYEVITMNITEGLHDVHHVENDVTFGLIALGFSATDVYGF PVGLYLGEENCRDQ |
|