Gene
| Gene Model ID | pfu_aug2.0_2240.1_02058 |
|---|---|
| Locus | scaffold2240.1 : 37032 ... 49325 : - |
| To GenomeBrowser | scaffold2240.1:37032..49325 |
| Genes list of scaffold | scaffold2240.1 |
| Synonym | pfu_aug1.0_19930.1_54623 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| carnitine o-palmitoyltransferase mitochondrial | GO:0043231 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2240.1_02058.t1 | 3 | 1 | Carn_acyltransf | 29 | 72 | 0.0 | 579.6 | 2.0e-14 | 1.5e-10 | 39.8 |
| pfu_aug2.0_2240.1_02058.t1 | 3 | 2 | Carn_acyltransf | 74 | 537 | 0.0 | 579.6 | 0.0 | 0.0 | 446.3 |
| pfu_aug2.0_2240.1_02058.t1 | 3 | 3 | Carn_acyltransf | 538 | 635 | 0.0 | 579.6 | 4.3e-30 | 3.2e-26 | 91.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2240.1_02058.t1 | gi|530582084|ref|XP_005284890.1| | PREDICTED: carnitine O-palmitoyltransferase 2, mitochondrial isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_2240.1_02058.t1 | gi|591375174|ref|XP_007062265.1| | PREDICTED: carnitine O-palmitoyltransferase 2, mitochondrial [Chelonia mydas] | 0.0 |
| pfu_aug2.0_2240.1_02058.t1 | gi|478528905|ref|XP_004438628.1| | PREDICTED: carnitine O-palmitoyltransferase 2, mitochondrial [Ceratotherium simum simum] | 0.0 |
| pfu_aug2.0_2240.1_02058.t1 | gi|507936051|ref|XP_004679080.1| | PREDICTED: carnitine O-palmitoyltransferase 2, mitochondrial [Condylura cristata] | 0.0 |
| pfu_aug2.0_2240.1_02058.t1 | gi|296207991|ref|XP_002750888.1| | PREDICTED: carnitine O-palmitoyltransferase 2, mitochondrial [Callithrix jacchus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2240.1_02058.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2240.1_02058.t1 atgggttatgagagatctacaagtacgacagaagatccagatttattacactccagtgaagtccctactgatcacttcca gcccagcctccctcgccttcctattcctaagcttgagcaaacgtgtcaacggtacctcacatgtgtaaaacagattataa cgccggaggagtacgctcacacagagaaagctgttaatgaattcaaaacaggagatggcatgattcgggccaccaacatg gtagtgtcatcactgagattcctgaagactttgagagctggagtattagaacctgatgtgtatcacttaaatcctaaaaa gtcggacacacaacaattcaggaaatttgtaaaaatgctgcctaaatccctgtcatggtatggtgcatattggtacaaag ccttcccattagacatgagccaatatggacgactttttaattctaccagaattcctagatttgagagggatgacttgttt acagatgaaagtgctagacacatactggtgatgagaaatggaaacttctatatatttgatgtgttcgacaaaaatggcaa gatagtcagccctgatgtgattttatctcaccttaagtatataaaaaatgacaaccggcctcccccagagtaccctatag gtgtactgaccgcgcaagaaagagatcactgggcaacactccgggaacagttacttaatgcaggaaatgaactgaatata aagttgatagacagtgctgtattttgccttatcctggatgatgtcacacccacagatgctaatactgtcacacgccagtt tctacatggggatggtgtcaatagatggtatgataaaagtttccagctaatcctcactccggatgccaaagcttgtgtta actttgagcacgcttggggagacggagtggcggtactacgttactttaatgaagtctttaaggattctaccacaaactca gcagtccatccgtccacacaacctgcctctgtagactcctccaatgttgtccaatgtttagatataaaattggatccgta cttaaaggataacataaagaaaggcaaggaaacatttgacaagacaatggctacgttggacctacatcacttagaatatc agaaatataccaagaaatatgtcaaagctcagaaattcagtccagattcactaatgcagcttgctatacagatggcctat tataggcagtatggaaagactgtagccacgtacgagtcatgtagtacggcagcatttaaacacggacgtacagagactat acggcctgcaacagaggctactaaaaaatgctgtgaaatgtttgttaacaagggaatcaattgtactgtagcagaattaa ggcaggccttggatcagtgttcgcagagacataatgaactcaccaaggaggcagctatgggtcatggatttgacaggcat ttgtttgctttacgtcacttagcacactgcctgggaattgcacctaacatattcatggaccctacttatcataaactttg ccataacatattgtccacctctacaatatccagtcctgccaagctgaggggaggttttgctcctgtcatagaggatggct acggcataagtcaggggtttgacagacacctgtttgccctccatcatctagcacagagtcgagacgacattccagagata tttaaagattccacatatcacaaggtgaaccataacatcctatccacgtccaccatatcaagtcctgctgtattgatagg aggatttgccccagtggtaccagacggttatggtgttggttattctatagaagatggtagaataggatttaatgtgacca gctaccctccagcaaccaatgtgagggagttcatcgagtgtgtagaacacagcttagacgatatctatgaagtgtttgaa ggcaggcagcccaagaaagtctcctga |
|
Protein
| Protein ID | pfu_aug2.0_2240.1_02058.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2240.1_02058.t1 MGYERSTSTTEDPDLLHSSEVPTDHFQPSLPRLPIPKLEQTCQRYLTCVKQIITPEEYAHTEKAVNEFKTGDGMIRATNM VVSSLRFLKTLRAGVLEPDVYHLNPKKSDTQQFRKFVKMLPKSLSWYGAYWYKAFPLDMSQYGRLFNSTRIPRFERDDLF TDESARHILVMRNGNFYIFDVFDKNGKIVSPDVILSHLKYIKNDNRPPPEYPIGVLTAQERDHWATLREQLLNAGNELNI KLIDSAVFCLILDDVTPTDANTVTRQFLHGDGVNRWYDKSFQLILTPDAKACVNFEHAWGDGVAVLRYFNEVFKDSTTNS AVHPSTQPASVDSSNVVQCLDIKLDPYLKDNIKKGKETFDKTMATLDLHHLEYQKYTKKYVKAQKFSPDSLMQLAIQMAY YRQYGKTVATYESCSTAAFKHGRTETIRPATEATKKCCEMFVNKGINCTVAELRQALDQCSQRHNELTKEAAMGHGFDRH LFALRHLAHCLGIAPNIFMDPTYHKLCHNILSTSTISSPAKLRGGFAPVIEDGYGISQGFDRHLFALHHLAQSRDDIPEI FKDSTYHKVNHNILSTSTISSPAVLIGGFAPVVPDGYGVGYSIEDGRIGFNVTSYPPATNVREFIECVEHSLDDIYEVFE GRQPKKVS |
|