Gene
| Gene Model ID | pfu_aug2.0_2242.1_08791 |
|---|---|
| Locus | scaffold2242.1 : 7706 ... 16839 : + |
| To GenomeBrowser | scaffold2242.1:7706..16839 |
| Genes list of scaffold | scaffold2242.1 |
| Synonym | pfu_aug1.0_86650.1_63987 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2242.1_08791.t1 | 1 | 1 | Lectin_C | 108 | 215 | 1.5e-14 | 54.5 | 1.1e-17 | 3.3e-14 | 53.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2242.1_08791.t1 | gi|723132973|ref|XP_010282980.1| | PREDICTED: C-type lectin domain family 17, member A-like [Phaethon lepturus] | 2.0e-18 |
| pfu_aug2.0_2242.1_08791.t1 | gi|734624159|ref|XP_010740114.1| | PREDICTED: CD209 antigen-like [Larimichthys crocea] | 2.0e-17 |
| pfu_aug2.0_2242.1_08791.t1 | gi|671037529|ref|XP_008709536.1| | PREDICTED: CD209 antigen isoform X1 [Ursus maritimus] | 3.0e-17 |
| pfu_aug2.0_2242.1_08791.t1 | gi|671037531|ref|XP_008709537.1| | PREDICTED: CD209 antigen isoform X2 [Ursus maritimus] | 5.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_2242.1_08791.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2242.1_08791.t1 atgcgactttgtgccttgttcgttttctattgtatccgggctctattttgtgtggagtttgaaagactgtccaagcaatg cgcagattctattgactcgtcatttcgtgttgttagcttggtacaatgtactgccagttgtgtgtcagataaagattgct atgcatttacatttaaagaagatgttatggtctgtaacttacattccgtacaaccgccatgttgtgaacgaacaaccgga gaaggaatttcttttaggagaaaaggttgtcccgattgctggatgcagtttcaggggaaatgttatttcttcagtgatgt caaaaagacattccaagaagccggggaacattgtcgaaaattgaattccaagctagctgagccagtacataatcaacaaa tgggattcctaaaacctaaagtcgttcaaacagatgaactgttctacattggcgtgactgactcccgtgttgagggtaca tggctgtatgcctccagcatgttacctgttcagggcaccgattggcgctatggggaacctaacaacgggaatggttatca cagcgaagactgtgttgaaatggatccgccaacgggaaactggaatgacgtcatctgtaatctacaactcaacttcatct gtgaaatatctacaaatagttaa |
|
Protein
| Protein ID | pfu_aug2.0_2242.1_08791.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2242.1_08791.t1 MRLCALFVFYCIRALFCVEFERLSKQCADSIDSSFRVVSLVQCTASCVSDKDCYAFTFKEDVMVCNLHSVQPPCCERTTG EGISFRRKGCPDCWMQFQGKCYFFSDVKKTFQEAGEHCRKLNSKLAEPVHNQQMGFLKPKVVQTDELFYIGVTDSRVEGT WLYASSMLPVQGTDWRYGEPNNGNGYHSEDCVEMDPPTGNWNDVICNLQLNFICEISTNS |
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