Gene
| Gene Model ID | pfu_aug2.0_2245.1_18742 |
|---|---|
| Locus | scaffold2245.1 : 77724 ... 91625 : - |
| To GenomeBrowser | scaffold2245.1:77724..91625 |
| Genes list of scaffold | scaffold2245.1 |
| Synonym | pfu_aug1.0_18703.1_40082 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| abc transporter b family protein | GO:0005524 GO:0008152 GO:0016021 GO:0042626 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2245.1_18742.t1 | 3 | 1 | ABC_membrane | 125 | 155 | 0.0 | 174.1 | 1.5 | 1400.0 | -1.7 |
| pfu_aug2.0_2245.1_18742.t1 | 2 | 1 | SMC_N | 149 | 175 | 6.3e-07 | 28.8 | 2.3 | 2200.0 | -2.4 |
| pfu_aug2.0_2245.1_18742.t1 | 3 | 2 | ABC_membrane | 208 | 481 | 0.0 | 174.1 | 0.0 | 0.0 | 174.1 |
| pfu_aug2.0_2245.1_18742.t1 | 3 | 3 | ABC_membrane | 514 | 527 | 0.0 | 174.1 | 7.5 | 7400.0 | -4.0 |
| pfu_aug2.0_2245.1_18742.t1 | 1 | 1 | ABC_tran | 545 | 693 | 2.4e-36 | 125.0 | 5.5e-39 | 5.4e-36 | 123.9 |
| pfu_aug2.0_2245.1_18742.t1 | 2 | 2 | SMC_N | 664 | 736 | 6.3e-07 | 28.8 | 1.5e-08 | 1.5e-05 | 24.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2245.1_18742.t1 | gi|676432985|ref|XP_009046752.1| | hypothetical protein LOTGIDRAFT_171935 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2245.1_18742.t1 | gi|524915116|ref|XP_005112364.1| | PREDICTED: ABC transporter B family member 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2245.1_18742.t1 | gi|260821041|ref|XP_002605842.1| | hypothetical protein BRAFLDRAFT_84327 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_2245.1_18742.t1 | gi|632968339|ref|XP_007900472.1| | PREDICTED: ABC transporter B family member 1-like [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_2245.1_18742.t1 | gi|390362534|ref|XP_001200108.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2245.1_18742.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2245.1_18742.t1 atgataacattatataccctacccacgttaagatacaccaatatatgtataggagtcgtccttgtggacgccatcgtttc tgtggtgttatggctgacaggtggaaacacagattattttgttgacaacataacagactttcacctgaaagaatcagtat ttgacctcgccatcatggcatctctcaagatcgtttccatagtgaccatcttgccgatattagagaacacttcatacaga cagctggacgaaccttacaatagagatctcggaagaaggagtacattgttacatatacttttgaagttctttttcttagt atttttagcatactccgctacaaaaggcggcttgattctttatgccattataaacgattccaattatgagcgaatgcatg cagaatataacgctttagtgataagtgccgttagttttagtgtcatacagtttcttatgaccttgttcagtggaaggtca atgaggagactaaaggtcatcagaattctacatcgttataacgatgctggagaggagattgacaaagatggaaaaccaat taaagaagctgtgaatttaaaaagattggctaaattagctaagcctgaggcaggtattttagtggctggatgtttctgtc tcatggtatctagtggtagctcgattgtggcaccattattttttggagcagtggttgatgcggcacaaagaagcatgagt gatctgactcgcactgccatcattatgctgttgatatacattgtggggtcaattttctccatgttcagaaatggtttatt tacattggctggtcaaagactggttgctaggttacgtacagagctgttcagtcatatcatccaacaagaaattgcatttt ttgatacaacaaggactggggaactgtgtaataggcttgcttcagatactcaagttttacagaatgcaacaacggtgaac atttccatgttggtacggtacatcttacagatgattggctcgctagcattgatgttttatttaaatgctgctttaacagg agtattgttagctgtggtacctttagtcagcatcactgctgtacaatatggtaaatttgtgaaaagaatgcaacagcaat tccaggaccgacttgctgacgccggcacgatggccgaggagagcatatccagtatacgtaccgtcagatcgttctccggg gagaataaagtcagtaaaacatacgctgaacatgtggacaaaagttaccagataggaagaaaactagccatagcaggagg tctgtttgagggtatagtgggatctatgacagcaggggtcataactctagtactatggtacggtggtaagctggtatatg ataatacacacggacatcacagtggtatcacacccggtgtacttacctcctttctgttgtacactctacaagtagcaatg gcgtttgccttgatgtcagcattgtatggagacttcatgaaagctgttggagcttcagtcagaatatttgacctcctgga cagaaaggccaccgtacccaatgacggaggggagatcatgactcgtcttagtggaagagttgaattcaaggacattttct ttacatatccgtccagaccagagacacaagtattgaagggcatatcattcactgtgaatccaggagaaatggtggctttg gtgggaccaagtggtggtgggaaatcaaccatcgtcaatcttatagaaaggttctacgatcctgactcaggaaccataac tctaggtgacagaccactaacagagttagatccccagtggttcagacagaaagtgtccatggtcagtcaggaacccacac tgtttgccagctctatcaaggataatattgcatatggacaagatgctagtatagaaaagatagaggcagtgtccaaggaa gctaatgcccatgagtttatatcaacttttgaagaggggtatgaaacattagtaggggagaggggcgtcaggttatctgg aggtcagaaacagagagtcgctatagctcgagctctgataatggatcctgctctactcttactggatgaggccactagtg cattagacgccgagagtgaacatcttgtacaggaagctattgaccgagccatgaaaggaagaactgttatagttatagct catagactgtctacagttagaaatgcttctaaggttatagtgatagataaaggggtaatagcggagataggaacacatga tgaacttctagccaatgatggagtatacaagaaactcgttctaagacagctgaatgccggagctgtaaacgccgcagatc tggctgccattagagaacaaatcacaaaagacgaggaagagtga |
|
Protein
| Protein ID | pfu_aug2.0_2245.1_18742.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2245.1_18742.t1 MITLYTLPTLRYTNICIGVVLVDAIVSVVLWLTGGNTDYFVDNITDFHLKESVFDLAIMASLKIVSIVTILPILENTSYR QLDEPYNRDLGRRSTLLHILLKFFFLVFLAYSATKGGLILYAIINDSNYERMHAEYNALVISAVSFSVIQFLMTLFSGRS MRRLKVIRILHRYNDAGEEIDKDGKPIKEAVNLKRLAKLAKPEAGILVAGCFCLMVSSGSSIVAPLFFGAVVDAAQRSMS DLTRTAIIMLLIYIVGSIFSMFRNGLFTLAGQRLVARLRTELFSHIIQQEIAFFDTTRTGELCNRLASDTQVLQNATTVN ISMLVRYILQMIGSLALMFYLNAALTGVLLAVVPLVSITAVQYGKFVKRMQQQFQDRLADAGTMAEESISSIRTVRSFSG ENKVSKTYAEHVDKSYQIGRKLAIAGGLFEGIVGSMTAGVITLVLWYGGKLVYDNTHGHHSGITPGVLTSFLLYTLQVAM AFALMSALYGDFMKAVGASVRIFDLLDRKATVPNDGGEIMTRLSGRVEFKDIFFTYPSRPETQVLKGISFTVNPGEMVAL VGPSGGGKSTIVNLIERFYDPDSGTITLGDRPLTELDPQWFRQKVSMVSQEPTLFASSIKDNIAYGQDASIEKIEAVSKE ANAHEFISTFEEGYETLVGERGVRLSGGQKQRVAIARALIMDPALLLLDEATSALDAESEHLVQEAIDRAMKGRTVIVIA HRLSTVRNASKVIVIDKGVIAEIGTHDELLANDGVYKKLVLRQLNAGAVNAADLAAIREQITKDEEE |
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