Gene
| Gene Model ID | pfu_aug2.0_2256.1_22001 |
|---|---|
| Locus | scaffold2256.1 : 11398 ... 22155 : - |
| To GenomeBrowser | scaffold2256.1:11398..22155 |
| Genes list of scaffold | scaffold2256.1 |
| Synonym | pfu_aug1.0_21482.1_11387 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nucleolar protein of 40 kda | GO:0003676 GO:0008270 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2256.1_22001.t1 | 1 | 1 | S1 | 3 | 65 | 1.7e-10 | 40.8 | 2.1e-13 | 5.3e-10 | 39.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2256.1_22001.t1 | gi|676481533|ref|XP_009062407.1| | hypothetical protein LOTGIDRAFT_128093 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2256.1_22001.t1 | gi|524890978|ref|XP_005102029.1| | PREDICTED: nucleolar protein of 40 kDa-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2256.1_22001.t1 | gi|260824746|ref|XP_002607328.1| | hypothetical protein BRAFLDRAFT_261238 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_2256.1_22001.t1 | gi|585646727|ref|XP_006811784.1| | PREDICTED: nucleolar protein of 40 kDa-like isoform X2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2256.1_22001.t1 | gi|390362034|ref|XP_787656.3| | PREDICTED: DEAD-box ATP-dependent RNA helicase 42 isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2256.1_22001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2256.1_22001.t1 atgactaaggtagcttcacttcaacaatatggggctttcatcaagattcctggtttacagaaacaaggtttggtccacaa gtcacagatgtcaaaagctcgtgttgaagacccatcagaaatgctgagtgtgggtgaaaaagtctactgtaaagtcatct cattagagaatgagaagataagcctgtccatgaaggtagtcaatcagactacaggacaagatgaagatcctgccaatgta caagcaagcatggatcagcaaaggaaaaggaaagtacagggtgagagaccacgtatagagctaggtgcagtgctggacac aacctgtaaaaaatgtggtggtcatggtcatttagcacaagattgtttccatacaaaaggtggtaaagtttatgaactga tccctgaacccgagaaaaagtcatttttcaaaatagaatcagattcagaaacagcctcaccaacaaagaaaaagaaaaag aaagacaagaaggtgaagaaatcaaagaaacataagaagcatcgatatagcagctcagagagtagttatggtagtagctc aagtgatgagaaaaggaagaagaaacataagaaacacaagaagcaaaaacataagaagaaacatagtagaaattccagcc tgtcagactacggatga |
|
Protein
| Protein ID | pfu_aug2.0_2256.1_22001.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2256.1_22001.t1 MTKVASLQQYGAFIKIPGLQKQGLVHKSQMSKARVEDPSEMLSVGEKVYCKVISLENEKISLSMKVVNQTTGQDEDPANV QASMDQQRKRKVQGERPRIELGAVLDTTCKKCGGHGHLAQDCFHTKGGKVYELIPEPEKKSFFKIESDSETASPTKKKKK KDKKVKKSKKHKKHRYSSSESSYGSSSSDEKRKKKHKKHKKQKHKKKHSRNSSLSDYG |
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