Gene
| Gene Model ID | pfu_aug2.0_2256.1_22002 |
|---|---|
| Locus | scaffold2256.1 : 24797 ... 40535 : - |
| To GenomeBrowser | scaffold2256.1:24797..40535 |
| Genes list of scaffold | scaffold2256.1 |
| Synonym | pfu_aug1.0_1630.1_00774 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| zinc finger ccch domain-containing protein 4 isoform x2 | GO:0044822 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2256.1_22002.t1 | 3 | 1 | zf-CCCH | 431 | 454 | 5.8e-10 | 38.6 | 8.0e-08 | 0.0012 | 18.4 |
| pfu_aug2.0_2256.1_22002.t1 | 3 | 2 | zf-CCCH | 460 | 484 | 5.8e-10 | 38.6 | 1.1e-07 | 0.0016 | 18.0 |
| pfu_aug2.0_2256.1_22002.t1 | 3 | 3 | zf-CCCH | 486 | 508 | 5.8e-10 | 38.6 | 1.3e-05 | 0.2 | 11.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2256.1_22002.t1 | gi|524895937|ref|XP_005104448.1| | PREDICTED: uncharacterized protein LOC101854514 isoform X1 [Aplysia californica] | 9.94922e-44 |
| pfu_aug2.0_2256.1_22002.t1 | gi|635040005|ref|XP_007995521.1| | PREDICTED: zinc finger CCCH domain-containing protein 4 isoform X2 [Chlorocebus sabaeus] | 1.0e-28 |
| pfu_aug2.0_2256.1_22002.t1 | gi|635040009|ref|XP_007995523.1| | PREDICTED: zinc finger CCCH domain-containing protein 4 isoform X4 [Chlorocebus sabaeus] | 1.0e-28 |
| pfu_aug2.0_2256.1_22002.t1 | gi|544512287|ref|XP_005589737.1| | PREDICTED: zinc finger CCCH domain-containing protein 4 isoform X5 [Macaca fascicularis] | 1.0e-28 |
| pfu_aug2.0_2256.1_22002.t1 | gi|530416049|ref|XP_005258735.1| | PREDICTED: zinc finger CCCH domain-containing protein 4 isoform X5 [Homo sapiens] | 1.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_2256.1_22002.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2256.1_22002.t1 atggatcaagaaggtgacatagaggaggggctgtcagaaagttactatgcagacgatactgaacctgtggaagaggaaat agaagattacttctatgacagagaagaagagggtgaagaaggagaggaagaagaggcccctggggaggaagatgggagaa atagacggaggaaacatagagagagtggggacaggagggagtcaagaaaacgcaggtcaagagatgatcatgaagataga cataagtcaaggaggaggtcaggtgaagacagttacgatgggaaagagaagaggcgatcaggaggtgaatactcagacta tgaaagtgaaggaagaagtcataggaagcacagatctgaagaaagggagggcaagtccagacggaaacatcataaacaca agagagacaagtctaggaaatccaagtctcggactgactccaggggaagtcatgatatggagcctgaggagggggagtta gaggacggggagatagatgaggaagaggatatagaagatcaccatgacgctgaatatccccttgacgatggtagaaacga taaaaaatacaacagagaaaacagtgatcgctctgaggggagctacaagcatgatggtaattttggtgagggagaggagg aagaagtagagagtggagaagaaaatcacagaaggaatgattcctggaagggtagaaacaatgatagaccaagggaaaat tggcgaaaccagagaggcaggggaaggagggatgacaggagaggaggtaaaatgaatagaggtggaagaaaagttccggg tcgttaccatgattatgacaatgtggatgaagaatctcaaggatggatgatgtctaaaaacaagcgatcaccggcagctc atagaaaccagggaggtaaccatcgacatagagataaatatgaccgagggggagatagatatgaagatggggatagccca ccaggaccctatgacagtccctctgatgaagactccgtggatgaatatggtgagagaagagggaagtcaaagaagtcaca gagtatgctgagcatgcttggagatgatatgttagaccctaacattgctgtggaggaggggcaggacctttataaaaaga aaccaaaatctaaaaaacgaggtggtgatcaaggagacagaagaggggataggaatgatagaaatcgtgaccgtggtgat aggggcttcaaaaggaaacagaataaagattatgaggaggaatactccgatcaaccaaagaagaagcccttgttacaaac acccatggaggatcgacccatctgtaggttctttaaggaaggaaagtgccaaaagggatatgattgtccgtttaatcatg acacggtactgtccaagaagccggagctgtgcaaatattacctcaactctgactgctcaaagggggataactgcattttt atgcacagtgaatatccatgcaagttttaccatacaggacgagagtgttttggtggagatgattgtaaattttcccatga tcctctcactgaagaaactcgtcatctcatagataagaaaatggaagatgaggagcgttatcaagggaaaaggccaagtt tactaggttctcctcctcgccatttgaaaatggatccagagacgcaggagcgtattaagaagattccctccatatttgat atagaagtatttccacctggccaaagtccaaagaaaccaccaaatcagcagggaaatcagggcccaggggccaggccctg gccctggacctggcccaggggggcagccaaacaggatgcagggcccccctcagaacatgatgggcccacctcaaagggtc gaatgccaggacctgggatgatgggcccacctcccgtatcaggagctggtccaggtatgatgggacccccacctgtatca ggggcaggaccaatgggaccaccacccccaggtcagatgggacctccaccaatgcacatggggcctccacatgggcctcc gatgggtccaccagggcctatgaaccatggccctatgggcccaccgggtccaagagggcccatgggtcctccacctggcc caatgaaccaactcaacccagcactgaacccagctgtagcccttgttggtgctttactacagcatgccacaggagttcga ccacccttaggtggccctggacctaatccaggaatgatgggaccaccaggccccccaggtccaatgatgatgcctcgccc ccagggaccaccagaaggattcggaccaaacatgtacccagagaatgacaggcatgagggattcaatcatgatcagggtc atggacataatgaaatggaacataatgctcaaaataatgaagatgtgaatcaagaacctccccaagatgtccccaagatg aatgatgatcccaacaaggagaagttagctatgatgggcctcgaccccgatacccttaacagtcttcccgccaaacagaa ggaactgttcctacggctacagggaaataagtctgccggggaggaaagtcccaagcacgatacccaggacgatggagagc agataaagaaggaacctaaagatgaacctaaacaagaaaaagaagatgttgatgatgactggtattctagtgatgaggaa gaaggaaagggaaagaaacccaaacttacagacattctgaagaatctcaacaaacaagcatctacccccgagtcccccca atcagccacacctaacccctcatctgctctcagtgtcatgcaaatgatcaatgctataaaaacaaatgctggctctggaa atagtgctacatcccccatagggtcccctacccacttaccccgtgatcccagacagagacttgatccccgtactggtaaa ccaggaggtcctgctatcatcccaattgatggacccgaggcaaaaatagaaccaccaacgtttattaactcttacgaagg agacatagcgttatatagacttgttccaatgtccaaggacaactctaccaaaggtcccccacctggtttgaatttgaatg atccacagtttaaaagtgatcctcgtattcaaagaatgttaaagcgtatggaagctactcgaggacagactatagattct ggaagtgttgatatgaaaagctcatcaaaggaaaataaaccagttgatccacgttctgctatgggatcaggaatgactga tcgtcctaatgatcctagagttaaaggatctgatccaagaatacaaaggacgatatcagacactggtggtcctaaaccac aagacccccgtcttctccgtgtacagtcaactcctgtgggacagggggcacctgctagtgatcccagactgggaaggcag gctagtggtccacctgatccccgaatgttagggagacaaataagtagggaaggacatcaggatcctcgattaggaagaca gttgtcaaatcaacccacctctaattttgatggatcaaacatcaatcgaccgagtgattcaaaaccagtagatccaagaa tgtcttcacaacttagtgcgtcttctgatccaaggaaattaaatagaccaaactctgttaatgatcctcggaatgtgtct cgacaaaattctctgactgatcctagagcacgtgttcaaatagaccagaaattggatttactcactgatcctaggatgaa accagagttagatatttcaaatttgaaacctttagatcctaaaataattcaatcaagtttagaagaagaagccgatggta ttgcttctcagttggaaattcttccagaaacaatggaaaataacaatgatcaaaccagcatacaagatcagactgaaaag cctaaattagactatagaaatgatccacgatttaaaaggaaaccggctggaaaacggaaaagcagcatggactacgcatc tccacttggtgacgaaggaggatcagacggttctacttatagtgcttacacacgaccccaaacaagtaatcaacgccaaa caaagacagatctaaaggtcaaatctgaccctagacttggtaacattagtgatacaaaaacaataaactccccatcacgt gagcagccatcacccacaagctcagagcaatctggtctgctcagtcttccccttccagagttacccccctttattccccc acctgaaccagagattaatacgagggattttttcaagacaatggatcctacagcttccccattctgctaa |
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Protein
| Protein ID | pfu_aug2.0_2256.1_22002.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2256.1_22002.t1 MDQEGDIEEGLSESYYADDTEPVEEEIEDYFYDREEEGEEGEEEEAPGEEDGRNRRRKHRESGDRRESRKRRSRDDHEDR HKSRRRSGEDSYDGKEKRRSGGEYSDYESEGRSHRKHRSEEREGKSRRKHHKHKRDKSRKSKSRTDSRGSHDMEPEEGEL EDGEIDEEEDIEDHHDAEYPLDDGRNDKKYNRENSDRSEGSYKHDGNFGEGEEEEVESGEENHRRNDSWKGRNNDRPREN WRNQRGRGRRDDRRGGKMNRGGRKVPGRYHDYDNVDEESQGWMMSKNKRSPAAHRNQGGNHRHRDKYDRGGDRYEDGDSP PGPYDSPSDEDSVDEYGERRGKSKKSQSMLSMLGDDMLDPNIAVEEGQDLYKKKPKSKKRGGDQGDRRGDRNDRNRDRGD RGFKRKQNKDYEEEYSDQPKKKPLLQTPMEDRPICRFFKEGKCQKGYDCPFNHDTVLSKKPELCKYYLNSDCSKGDNCIF MHSEYPCKFYHTGRECFGGDDCKFSHDPLTEETRHLIDKKMEDEERYQGKRPSLLGSPPRHLKMDPETQERIKKIPSIFD IEVFPPGQSPKKPPNQQGNQGPGARPWPWTWPRGAAKQDAGPPSEHDGPTSKGRMPGPGMMGPPPVSGAGPGMMGPPPVS GAGPMGPPPPGQMGPPPMHMGPPHGPPMGPPGPMNHGPMGPPGPRGPMGPPPGPMNQLNPALNPAVALVGALLQHATGVR PPLGGPGPNPGMMGPPGPPGPMMMPRPQGPPEGFGPNMYPENDRHEGFNHDQGHGHNEMEHNAQNNEDVNQEPPQDVPKM NDDPNKEKLAMMGLDPDTLNSLPAKQKELFLRLQGNKSAGEESPKHDTQDDGEQIKKEPKDEPKQEKEDVDDDWYSSDEE EGKGKKPKLTDILKNLNKQASTPESPQSATPNPSSALSVMQMINAIKTNAGSGNSATSPIGSPTHLPRDPRQRLDPRTGK PGGPAIIPIDGPEAKIEPPTFINSYEGDIALYRLVPMSKDNSTKGPPPGLNLNDPQFKSDPRIQRMLKRMEATRGQTIDS GSVDMKSSSKENKPVDPRSAMGSGMTDRPNDPRVKGSDPRIQRTISDTGGPKPQDPRLLRVQSTPVGQGAPASDPRLGRQ ASGPPDPRMLGRQISREGHQDPRLGRQLSNQPTSNFDGSNINRPSDSKPVDPRMSSQLSASSDPRKLNRPNSVNDPRNVS RQNSLTDPRARVQIDQKLDLLTDPRMKPELDISNLKPLDPKIIQSSLEEEADGIASQLEILPETMENNNDQTSIQDQTEK PKLDYRNDPRFKRKPAGKRKSSMDYASPLGDEGGSDGSTYSAYTRPQTSNQRQTKTDLKVKSDPRLGNISDTKTINSPSR EQPSPTSSEQSGLLSLPLPELPPFIPPPEPEINTRDFFKTMDPTASPFC |
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