Gene
| Gene Model ID | pfu_aug2.0_2256.1_22003 |
|---|---|
| Locus | scaffold2256.1 : 50807 ... 66800 : + |
| To GenomeBrowser | scaffold2256.1:50807..66800 |
| Genes list of scaffold | scaffold2256.1 |
| Synonym | pfu_aug1.0_1630.1_00776 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription elongation factor spt5 isoform x2 | GO:0000122 GO:0006368 GO:0006370 GO:0010033 GO:0016239 GO:0019899 GO:0032044 GO:0032785 GO:0032786 GO:0044822 GO:0045944 GO:0046982 GO:0050434 GO:1900364 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_2256.1_22003.t1 | 2 | 1 | Spt5_N | 65 | 90 | 1.2e-09 | 38.6 | 0.064 | 190.0 | 2.7 |
| pfu_aug2.0_2256.1_22003.t1 | 2 | 2 | Spt5_N | 97 | 189 | 1.2e-09 | 38.6 | 4.0e-13 | 1.2e-09 | 38.6 |
| pfu_aug2.0_2256.1_22003.t1 | 1 | 1 | Spt5-NGN | 195 | 278 | 3.9e-24 | 84.2 | 2.4e-27 | 7.1e-24 | 83.3 |
| pfu_aug2.0_2256.1_22003.t1 | 6 | 1 | KOW | 292 | 319 | 3.6e-26 | 89.8 | 0.0053 | 16.0 | 5.4 |
| pfu_aug2.0_2256.1_22003.t1 | 6 | 2 | KOW | 437 | 460 | 3.6e-26 | 89.8 | 8.3e-05 | 0.25 | 11.1 |
| pfu_aug2.0_2256.1_22003.t1 | 6 | 3 | KOW | 490 | 515 | 3.6e-26 | 89.8 | 1.0e-09 | 3.1e-06 | 26.6 |
| pfu_aug2.0_2256.1_22003.t1 | 6 | 4 | KOW | 556 | 579 | 3.6e-26 | 89.8 | 2.0e-07 | 0.0006 | 19.4 |
| pfu_aug2.0_2256.1_22003.t1 | 6 | 5 | KOW | 664 | 693 | 3.6e-26 | 89.8 | 2.0e-09 | 5.9e-06 | 25.7 |
| pfu_aug2.0_2256.1_22003.t1 | 4 | 1 | CTD | 712 | 740 | 3.5e-10 | 40.3 | 0.0019 | 5.6 | 7.4 |
| pfu_aug2.0_2256.1_22003.t1 | 4 | 2 | CTD | 733 | 864 | 3.5e-10 | 40.3 | 1.2e-13 | 3.5e-10 | 40.3 |
| pfu_aug2.0_2256.1_22003.t1 | 4 | 3 | CTD | 848 | 930 | 3.5e-10 | 40.3 | 5.0 | 15000.0 | -9.2 |
| pfu_aug2.0_2256.1_22003.t1 | 4 | 4 | CTD | 893 | 969 | 3.5e-10 | 40.3 | 5.0 | 15000.0 | -5.8 |
| pfu_aug2.0_2256.1_22003.t1 | 6 | 6 | KOW | 1028 | 1051 | 3.6e-26 | 89.8 | 0.032 | 96.0 | 2.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_2256.1_22003.t1 | gi|676440046|ref|XP_009049048.1| | hypothetical protein LOTGIDRAFT_225963 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_2256.1_22003.t1 | gi|291241653|ref|XP_002740721.1| | PREDICTED: transcription elongation factor SPT5 isoform X1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_2256.1_22003.t1 | gi|524878699|ref|XP_005096032.1| | PREDICTED: transcription elongation factor SPT5-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_2256.1_22003.t1 | gi|395526018|ref|XP_003765172.1| | 0.0 | |
| pfu_aug2.0_2256.1_22003.t1 | gi|507971329|ref|XP_004690676.1| | PREDICTED: transcription elongation factor SPT5 isoform X2 [Condylura cristata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_2256.1_22003.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2256.1_22003.t1 atgtcagacagtgaagacaatgagaatttttctgatgctgaaagtgtaggcagtggaggagggagtgggaatgaaggtgc acacagtgatgtaggtagtggtggtggtagtgacgcaggtagtgaagctccaagtatacgctctagtggcagcaaacgaa gaaataggaaacgcagaatcacagaagaagatgaagatgatcttattgatgatgaagatgaatatgatgaagaagaagat gaggattatgatgacaggaagaggaggaagaaaccaaggcatggaggatacattttagatgaagccgatgttgatgagga gggggatgaagatgaagaagactgggaagatggtgctgaagatttactggagacaaaatcttcatatgaaggaccaacag caaaggaaatagaaagtaacagaagattagaacatctgttcaccacccagaaggaggatgagatagaggagtattacaag aagaagtatggcgattcctccgtggctgccaggtttggtgagggagaggatatgtcagatgagatcactcagcaggggct gcttcctggtgtcaaagacccaaatctatggttggtgaagtgtcgcattggagaagaaagggcaacttgtatgcaactta tgaggaaatttattgcttatcagttcactgatgaaattaaagctgtaatctccaaggagagtttgaaaggttacatatac gtggaatcttacaaacagactcacgtcaaacaagctatagaaggcgtggggaacctcaggatgggacaatggtctcagat gatggtgcccatcaaagagatgacggatgtattgcgtgtagtaaaggaagtggctacactgaaggccaaggcatgggtga gactaaagagaggtttatataaagatgacctggctcaagtggactacgtagaaccagctcagaatatagtacacctgaaa ctcctaccaagaattgactatacccgcaagagaggcgtcctgaaatacccacaggatgataacgagagaaagaaaaagaa aagaagacctacacagaaacttttcgatgttgatgcaatcagagctattggaggagagatcacaacagatggagatttta ttatatttgaaaataacagatacagtagaaaaggtttcctgttcaagagctttgtcatgtctgcaattatagcagaggga gtaaaacctacattagcagagttagagaagtttgaagatacaccagagggagctgatgtggaattaattcctgagaagtc agcaggggaggtgactcataacttcaccccaggagacatggtgaaggtgattgaaggggagttaatcaatctacaaggaa aagttatatctatagagggtaatatgatcactatgttaccgaaacaagaggggttgaatgatcccataatgttccctgcc aatgagctgaagaaacacttcagaatgggtgatcacgttaaggtgttagaggggaagtatgaaggtgatactggtctgat cgtcagggtggaggataatatggtggtgctcttctcagatctcacaatgcacgaggtaataaacataaagccacaagcag tgacaagaaagagagatactaggaatgctgtggccttagactctgagaataacaatatacaagttaaagacattgttaaa gtcattgatggtccacattcaggcagacagggggagataatgcatctgtacaggagttatgctttcttgatgtctcggac aatgacagagaacggaggttactttgtttgtaggacaagacatcttgtgctggctggaggttccaagtctgccaacaatg ctggtctgacagtgacagggtttgctccaatgtcccccaggatatcaagccctgcccatcccagtggtggtggagcagtg ggggctgggaacatgactccagggaggggtagagggggtgggcttagtaaacgagatagagagctgattggtcaaactgt tagaattatacaaggacccttcaaaggttatattggtatagtaaaggatgccacagaatccacggctagagttgagcttc actccagctgtaaaaccatctctgtcgacagatctcgtcttagctctctacatggtggtcgtactacaggggtccgtaca gagtatgccacaccaggtcgcacacccacccacttgggatctcagactcctatgtatgggtcgaggacacctatgtatgg ttcccagactcctctccacgatggaagccgtacccctaactatggcagcatgacaccgtcacacgagcctggtagccgga ctccaggacagagtgcttgggatcccaccaaccctaatacacctacaaggttaaatgatttcaatgactatgagttcaat gagaatccgtctcctgctgattacgcctccacacctaaccctacaacccctggataccaagctgacacacccagtcccct ggggccattcacacctcaaacacctggtactagttactccccctactcacaaacatccccatcaccagcaggatttagtg ctcctagtccagggtttgggagcacacctagcccccttagtggagctggataccaaccctccccatctggtagtggtttt aacagcacaccttcacccctcgggtacagtccaatgacgcccggggcaccgtatacaccccagacccccggcacagctat ggaccatactcctagtccagggtttgggagcacacctagcccccttagtggagctggataccaaccctccccatctggta gtggttttaacagcacaccttcacccctcgggtacagtccaatgacgcccggggcaccgtatacaccccagacccccggc acagctatggaccatagtatggcagactggcataccacggatatagaagtcaagatcaaggagacccatgatgatacata tctcatacaccagactggaatcattaggagtgttacgggaggaatgtgttcactgtacatacctgaagaagataaaatgg tcaatatttcctgtgagcacctggaacctgtaccaccagaaaaaggagataaggctaaggttattttaggagaggataga gagctgactggagcattactgagtattgatggggcagagggagtgctgaaaacggatagcggagaaatcaagatgttgtc tattaagtacctatgtaaagctggaacatga |
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Protein
| Protein ID | pfu_aug2.0_2256.1_22003.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_2256.1_22003.t1 MSDSEDNENFSDAESVGSGGGSGNEGAHSDVGSGGGSDAGSEAPSIRSSGSKRRNRKRRITEEDEDDLIDDEDEYDEEED EDYDDRKRRKKPRHGGYILDEADVDEEGDEDEEDWEDGAEDLLETKSSYEGPTAKEIESNRRLEHLFTTQKEDEIEEYYK KKYGDSSVAARFGEGEDMSDEITQQGLLPGVKDPNLWLVKCRIGEERATCMQLMRKFIAYQFTDEIKAVISKESLKGYIY VESYKQTHVKQAIEGVGNLRMGQWSQMMVPIKEMTDVLRVVKEVATLKAKAWVRLKRGLYKDDLAQVDYVEPAQNIVHLK LLPRIDYTRKRGVLKYPQDDNERKKKKRRPTQKLFDVDAIRAIGGEITTDGDFIIFENNRYSRKGFLFKSFVMSAIIAEG VKPTLAELEKFEDTPEGADVELIPEKSAGEVTHNFTPGDMVKVIEGELINLQGKVISIEGNMITMLPKQEGLNDPIMFPA NELKKHFRMGDHVKVLEGKYEGDTGLIVRVEDNMVVLFSDLTMHEVINIKPQAVTRKRDTRNAVALDSENNNIQVKDIVK VIDGPHSGRQGEIMHLYRSYAFLMSRTMTENGGYFVCRTRHLVLAGGSKSANNAGLTVTGFAPMSPRISSPAHPSGGGAV GAGNMTPGRGRGGGLSKRDRELIGQTVRIIQGPFKGYIGIVKDATESTARVELHSSCKTISVDRSRLSSLHGGRTTGVRT EYATPGRTPTHLGSQTPMYGSRTPMYGSQTPLHDGSRTPNYGSMTPSHEPGSRTPGQSAWDPTNPNTPTRLNDFNDYEFN ENPSPADYASTPNPTTPGYQADTPSPLGPFTPQTPGTSYSPYSQTSPSPAGFSAPSPGFGSTPSPLSGAGYQPSPSGSGF NSTPSPLGYSPMTPGAPYTPQTPGTAMDHTPSPGFGSTPSPLSGAGYQPSPSGSGFNSTPSPLGYSPMTPGAPYTPQTPG TAMDHSMADWHTTDIEVKIKETHDDTYLIHQTGIIRSVTGGMCSLYIPEEDKMVNISCEHLEPVPPEKGDKAKVILGEDR ELTGALLSIDGAEGVLKTDSGEIKMLSIKYLCKAGT |
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