Gene
| Gene Model ID | pfu_aug2.0_228.1_27064 |
|---|---|
| Locus | scaffold228.1 : 1 ... 24420 : + |
| To GenomeBrowser | scaffold228.1:1..24420 |
| Genes list of scaffold | scaffold228.1 |
| Synonym | pfu_aug1.0_1680.1_22713 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_228.1_27064.t2 | 4 | 1 | GTP_EFTU_D2 | 55 | 79 | 7.6e-06 | 25.9 | 3.5 | 5200.0 | -2.4 |
| pfu_aug2.0_228.1_27064.t2 | 1 | 1 | SRPRB | 80 | 208 | 3.2e-06 | 26.4 | 1.9e-08 | 2.8e-05 | 23.3 |
| pfu_aug2.0_228.1_27064.t2 | 1 | 1 | GTP_EFTU | 81 | 241 | 4.2e-40 | 137.1 | 3.09967e-42 | 4.7e-39 | 133.7 |
| pfu_aug2.0_228.1_27064.t2 | 2 | 1 | MMR_HSR1 | 82 | 188 | 8.5e-08 | 32.1 | 3.8e-10 | 5.7e-07 | 29.5 |
| pfu_aug2.0_228.1_27064.t2 | 1 | 1 | Miro | 82 | 190 | 3.3e-07 | 30.8 | 7.6e-10 | 1.1e-06 | 29.0 |
| pfu_aug2.0_228.1_27064.t2 | 2 | 1 | FeoB_N | 82 | 237 | 1.0e-05 | 24.8 | 3.3e-08 | 4.9e-05 | 22.6 |
| pfu_aug2.0_228.1_27064.t2 | 4 | 2 | GTP_EFTU_D2 | 180 | 202 | 7.6e-06 | 25.9 | 1.9 | 2800.0 | -1.5 |
| pfu_aug2.0_228.1_27064.t2 | 3 | 1 | IF-2 | 246 | 299 | 4.3e-25 | 87.7 | 2.6 | 3800.0 | -2.3 |
| pfu_aug2.0_228.1_27064.t2 | 4 | 3 | GTP_EFTU_D2 | 268 | 329 | 7.6e-06 | 25.9 | 5.2e-09 | 7.6e-06 | 25.9 |
| pfu_aug2.0_228.1_27064.t2 | 3 | 2 | IF-2 | 330 | 365 | 4.3e-25 | 87.7 | 4.1 | 6000.0 | -2.9 |
| pfu_aug2.0_228.1_27064.t2 | 4 | 4 | GTP_EFTU_D2 | 392 | 405 | 7.6e-06 | 25.9 | 0.8 | 1200.0 | -0.3 |
| pfu_aug2.0_228.1_27064.t2 | 3 | 3 | IF-2 | 405 | 498 | 4.3e-25 | 87.7 | 2.9e-28 | 4.3e-25 | 87.7 |
| pfu_aug2.0_228.1_27064.t2 | 2 | 2 | MMR_HSR1 | 481 | 530 | 8.5e-08 | 32.1 | 0.62 | 930.0 | -0.2 |
| pfu_aug2.0_228.1_27064.t2 | 2 | 2 | FeoB_N | 519 | 552 | 1.0e-05 | 24.8 | 1.3 | 1900.0 | -2.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_228.1_27064.t2 | gi|642929350|ref|XP_008195799.1| | PREDICTED: translation initiation factor IF-2, mitochondrial [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_228.1_27064.t2 | gi|524915088|ref|XP_005112351.1| | PREDICTED: translation initiation factor IF-2, mitochondrial-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_228.1_27064.t2 | gi|701353277|ref|XP_010002887.1| | PREDICTED: translation initiation factor IF-2, mitochondrial [Chaetura pelagica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_228.1_27064.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27064.t1 aggcagtggttgcagttatgtcacagcttaaaattccaaaatcaatgttcaagcatataaaaccaaactctaagttaagc tccattgagcttattaaacaaatcagtaaatcatttggtgttaccatgtttacaatcagaagtagacctacggctcaaga gttaaaggaagaagagaaaagaattaaagacctaatcaaaccggaacctcctagcctagaggaaatggtcagttgtccac cagtggtcactataatgggacatgttgaccatggaaaaacatctcttcttgatgctttaagaaagagtaatattgttgat aaggaatttggtggaattacacaacatataggagctttctcagtaagtctagccagtgggcatcagatcacattcttgga cacacctggacatgcagccttctcatccatgcgagcccggggagctgtcgttacggatatcgtagtgttagtggtagcgg ccgacgatggcataatgccacagactatagagtctatacaacatgccagaaaagcaggagttcctattgtagttgcaata aataagattgatgtgccaaatgctgatatagatagagttataaagggcttaatggagcaaggagtaacattagaagatta tggtggtgatacacagtgggttccaatctctgctaaaaatgggactaacttacaagaactacaggagaagatagtaacgc tagcggaggtgcttgatattaaatgtgatcctaatggcatggtggaggggtatatactagagtccaaacaagatcatgct agaggatctctagcgacagttttggttaaaagaggaacgttaaagaatggtaaaattattgtggctggtacaacctatgc caaggttaagggaatgcagaacgaacgaggtgaggcggtgaagaaagtcagtcctgcacatcccgtggaagtgttaggtt ggaaggaggttcccagtgctggggacgaggtcctggaagccagcacagagagaattgccaaagatgttgtagacttcaga cttagtcagttacagagtaaaaaacaagaagaggatgcagagattataaaagtcaaacagatggaagacagggaagtgta taacgaaaagagaaaacaaatgaaacatttagggaaaagaatattcagaaaatcatatgtgcgagtgaaagagggtatca taggcaaagatatggagagcccaaatctgtccgtagtaattaaaggtttgtag |
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| Transcript ID | pfu_aug2.0_228.1_27064.t2 |
| Definition | - |
>pfu_aug2.0_228.1_27064.t2 aggcagtggttgcagttatgtcacagcttaaaattccaaaatcaatgttcaagcatataaaaccaaactctaagttaagc tccattgagcttattaaacaaatcagtaaatcatttggtgttaccatgtttacaatcagaagtagacctacggctcaaga gttaaaggaagaagagaaaagaattaaagacctaatcaaaccggaacctcctagcctagaggaaatggtcagttgtccac cagtggtcactataatgggacatgttgaccatggaaaaacatctcttcttgatgctttaagaaagagtaatattgttgat aaggaatttggtggaattacacaacatataggagctttctcagtaagtctagccagtgggcatcagatcacattcttgga cacacctggacatgcagccttctcatccatgcgagcccggggagctgtcgttacggatatcgtagtgttagtggtagcgg ccgacgatggcataatgccacagactatagagtctatacaacatgccagaaaagcaggagttcctattgtagttgcaata aataagattgatgtgccaaatgctgatatagatagagttataaagggcttaatggagcaaggagtaacattagaagatta tggtggtgatacacagtgggttccaatctctgctaaaaatgggactaacttacaagaactacaggagaagatagtaacgc tagcggaggtgcttgatattaaatgtgatcctaatggcatggtggaggggtatatactagagtccaaacaagatcatgct agaggatctctagcgacagttttggttaaaagaggaacgttaaagaatggtaaaattattgtggctggtacaacctatgc caaggttaagggaatgcagaacgaacgaggtgaggcggtgaagaaagtcagtcctgcacatcccgtggaagtgttaggtt ggaaggaggttcccagtgctggggacgaggtcctggaagccagcacagagagaattgccaaagatgttgtagacttcaga cttagtcagttacagagtaaaaaacaagaagaggatgcagagattataaaagtcaaacagatggaagacagggaagtgta taacgaaaagagaaaacaaatgaaacatttagggaaaagaatattcagaaaatcatatgtgcgagtgaaagagggtatca taggcaaagatatggagagcccaaatctgtccgtagtaattaaaggtgatgtgagtggctcaattgatgccatcttgaac acattagccacatatgactcgcagaaatgccggcttgatataatggactttgatgtaggcaatataaccgaagctgacat ctctttagcacaagattttaacggtgcagtgttaggatttaacgtaactgcttccaaagaagtcttaaagaaagcagagg aagtaggagtctctgtaaaaatgaataatgtgatatacaaactttttgacgatgtaatagaaatgctgaatgaacgcctc cctttgatagaggaagaggaaatagtcggtgaagcagaagttttaaaacccttctcagttgcagtaaacaaatccaagca agtcaatgtgggaggatgtgtatgtaataaaggaaccttgagaaaagatcttgattacagactagaacgtaatggagaag tcctctttgaaggcctttcgattgataccaaaattttggaccttgtaaccttgacctttgacctacttttcaaaaacttt atcattgggtataacttttga |
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Protein
| Protein ID | pfu_aug2.0_228.1_27064.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27064.t1 AVVAVMSQLKIPKSMFKHIKPNSKLSSIELIKQISKSFGVTMFTIRSRPTAQELKEEEKRIKDLIKPEPPSLEEMVSCPP VVTIMGHVDHGKTSLLDALRKSNIVDKEFGGITQHIGAFSVSLASGHQITFLDTPGHAAFSSMRARGAVVTDIVVLVVAA DDGIMPQTIESIQHARKAGVPIVVAINKIDVPNADIDRVIKGLMEQGVTLEDYGGDTQWVPISAKNGTNLQELQEKIVTL AEVLDIKCDPNGMVEGYILESKQDHARGSLATVLVKRGTLKNGKIIVAGTTYAKVKGMQNERGEAVKKVSPAHPVEVLGW KEVPSAGDEVLEASTERIAKDVVDFRLSQLQSKKQEEDAEIIKVKQMEDREVYNEKRKQMKHLGKRIFRKSYVRVKEGII GKDMESPNLSVVIKGL |
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| Protein ID | pfu_aug2.0_228.1_27064.t2 |
| Definition | - |
>pfu_aug2.0_228.1_27064.t2 AVVAVMSQLKIPKSMFKHIKPNSKLSSIELIKQISKSFGVTMFTIRSRPTAQELKEEEKRIKDLIKPEPPSLEEMVSCPP VVTIMGHVDHGKTSLLDALRKSNIVDKEFGGITQHIGAFSVSLASGHQITFLDTPGHAAFSSMRARGAVVTDIVVLVVAA DDGIMPQTIESIQHARKAGVPIVVAINKIDVPNADIDRVIKGLMEQGVTLEDYGGDTQWVPISAKNGTNLQELQEKIVTL AEVLDIKCDPNGMVEGYILESKQDHARGSLATVLVKRGTLKNGKIIVAGTTYAKVKGMQNERGEAVKKVSPAHPVEVLGW KEVPSAGDEVLEASTERIAKDVVDFRLSQLQSKKQEEDAEIIKVKQMEDREVYNEKRKQMKHLGKRIFRKSYVRVKEGII GKDMESPNLSVVIKGDVSGSIDAILNTLATYDSQKCRLDIMDFDVGNITEADISLAQDFNGAVLGFNVTASKEVLKKAEE VGVSVKMNNVIYKLFDDVIEMLNERLPLIEEEEIVGEAEVLKPFSVAVNKSKQVNVGGCVCNKGTLRKDLDYRLERNGEV LFEGLSIDTKILDLVTLTFDLLFKNFIIGYNF |
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