Gene
| Gene Model ID | pfu_aug2.0_228.1_27069 |
|---|---|
| Locus | scaffold228.1 : 182395 ... 202549 : + |
| To GenomeBrowser | scaffold228.1:182395..202549 |
| Genes list of scaffold | scaffold228.1 |
| Synonym | pfu_aug1.0_1912.1_00883 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_228.1_27069.t1 | 2 | 1 | Dehydrin | 20 | 322 | 3.3e-10 | 40.4 | 3.3e-05 | 0.081 | 13.2 |
| pfu_aug2.0_228.1_27069.t1 | 2 | 1 | Slu7 | 93 | 334 | 0.0 | 231.6 | 0.0 | 0.0 | 231.6 |
| pfu_aug2.0_228.1_27069.t1 | 2 | 2 | Dehydrin | 378 | 437 | 3.3e-10 | 40.4 | 0.00014 | 0.35 | 11.1 |
| pfu_aug2.0_228.1_27069.t1 | 2 | 2 | Slu7 | 393 | 437 | 0.0 | 231.6 | 0.035 | 87.0 | 2.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_228.1_27069.t1 | gi|676472746|ref|XP_009059590.1| | hypothetical protein LOTGIDRAFT_124539 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_228.1_27069.t1 | gi|410913939|ref|XP_003970446.1| | 0.0 | |
| pfu_aug2.0_228.1_27069.t1 | gi|677971900|ref|XP_009071306.1| | PREDICTED: pre-mRNA-splicing factor SLU7 isoform X2 [Acanthisitta chloris] | 0.0 |
| pfu_aug2.0_228.1_27069.t1 | gi|699681564|ref|XP_009902963.1| | PREDICTED: pre-mRNA-splicing factor SLU7 isoform X2 [Picoides pubescens] | 0.0 |
| pfu_aug2.0_228.1_27069.t1 | gi|675623890|ref|XP_008940143.1| | PREDICTED: pre-mRNA-splicing factor SLU7 isoform X2 [Merops nubicus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_228.1_27069.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27069.t1 atgcaggccccatggtattataatgttactcaagccacccttaaacatcaaaggcaacaagaagacaaaatcaaggaatt cacaaagatgggcaactggtacaagaaaggagtgaaagaggggccagtggcaaccaagtttagaaagggagcatgtgaaa attgtggagcaattacacacaaaaagaaagactgtcttgagagacccagaaaaatcggtgctaaatacacaggtgaagat atggccccagacgagtacatccaaccacagctagactttgattttgacggtaaacgagatcggtggaacggaaaagatat tgacgaccatcaagcacaagttaaggaagattttgagaggatagaggaggcaaaaagaatgctgaaagaacagaatttta tgcagggagaaaaagaggcagaggaaaagaaaaaagacggcagtgaagatgaagataaatatggagatgacgtagacatg cagggtcagaagtttgaaaccaaacaaagaatcaccgttagaaatctacgtatcagagaagatacggctaagtatttata caatctggatccaaattcagcattttacgatcctaagacgagatccatgagagagaatccgtttaaaaaccaaaacaaag aattagctgaaaaatatgtgggagataatttcgtcagattttctgtatttgcatggaatgcctacgagagaggaacagag gtgcatttacaagccgatccaacaaaattagaactactcagtaaagaagtggacaaacggaaagaaaactttaaaacttc cgctaaagacagtatactcgataaatatggaggggaggaacatttacaggccccgcccaagcaattgttattagctcaaa cagaagactacgtggagtattctcgtcacggttcagtgatcaagggtaacgagaaagctaaaatatgttctaaatatgag gaagatgtttatatcaataatcacacaagtgtatggggatcttactggaaagatggtcaatggggatataagtgctgcca ctccttaatcaaggaggcatattgtacaggagaaaaaggaatagaagcaagtcagtctgatatattggcaattgaaaaca gttctcaggtagaagaggaggaggaagaagaagaagaacccaagtcattattagagcaacaccaagaaaaaatgaaagag aagagtaagaaaaagaagaagaaaaagaagagtaagaagaagcacaagaagaaggaaagcagcagctctgaatcagagtc tgaagatgaagaaaaggagaaagagagaaaacttaaagagaaagccatccactgcaagtatgacatcgtcatcagactga aagtgggtgtcagaaatagctgctctcagttttgggaatag |
|
Protein
| Protein ID | pfu_aug2.0_228.1_27069.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_228.1_27069.t1 MQAPWYYNVTQATLKHQRQQEDKIKEFTKMGNWYKKGVKEGPVATKFRKGACENCGAITHKKKDCLERPRKIGAKYTGED MAPDEYIQPQLDFDFDGKRDRWNGKDIDDHQAQVKEDFERIEEAKRMLKEQNFMQGEKEAEEKKKDGSEDEDKYGDDVDM QGQKFETKQRITVRNLRIREDTAKYLYNLDPNSAFYDPKTRSMRENPFKNQNKELAEKYVGDNFVRFSVFAWNAYERGTE VHLQADPTKLELLSKEVDKRKENFKTSAKDSILDKYGGEEHLQAPPKQLLLAQTEDYVEYSRHGSVIKGNEKAKICSKYE EDVYINNHTSVWGSYWKDGQWGYKCCHSLIKEAYCTGEKGIEASQSDILAIENSSQVEEEEEEEEEPKSLLEQHQEKMKE KSKKKKKKKKSKKKHKKKESSSSESESEDEEKEKERKLKEKAIHCKYDIVIRLKVGVRNSCSQFWE |
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